Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq1843 221 1e-52 >seq1843 Length=1107702 Score = 221 bits (244), Expect = 1e-52 Identities = 638/969 (66%), Gaps = 27/969 (3%) Strand=Plus/Minus Query 109140 CGCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTT 109199 ||| |||||||| ||||||||||| ||| | || || ||||| ||| ||||| | Sbjct 492105 CGCCTACTTTGTTGAATGGGGTGTCTACCCAAGGAAGTTCCCCGTTGACCGTGTGCCCAT 492046 Query 109200 GCCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAA 109259 |||||| | | ||| ||||||| ||||| || ||||| ||||| || || |||||||| Sbjct 492045 CCCCAATCTTACTCATCTGCTGTATGGTTTCATCCCAATCTGTGGAGGAGATGGCATCAA 491986 Query 109260 CGACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCG 109319 |||| | || || |||||||| | ||| |||| |||| ||| |||| | Sbjct 491985 CGACAGTTTGAAGGAGATCGAAGGCAGTTTCCAAGCTCTGCAGAGATCATGCAGCGGCAG 491926 Query 109320 CGACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGG 109379 || |||||||| || || || ||||| |||||| || | |||||||| || || || Sbjct 491925 GGAAGATTTCAAGGTATCTATCCACGATCCTTGGGCTGCACTCCAAAAACCACAGAAGGG 491866 Query 109380 CGTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATT 109439 || | | ||||||||||| ||||| || ||||| || ||||||||| | ||| Sbjct 491865 TTTGTCATCCTGGAACGAGCCTTACAAGGGTAACTTCGGCCAATTGATGATGTTGAAACA 491806 Query 109440 GGCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACGTTGTCGGACCCGTT 109499 || | || || | || || | || || | || || ||||| || | |||||||| Sbjct 491805 AGCGAGACCAGACCTGAAGATCTTGCCTTCTGTTGGTGGATGGACCCTGGCTGACCCGTT 491746 Query 109500 TTATTTTATGCAC-GATTCGGCGAAAAGAGCCAC--ATTCGTTGAATCGGTGCGCGAATT 109556 | | || | ||| || || | ||||| ||| ||||||| || || || || Sbjct 491745 CT-TCTTTTTCACTGA--CGAAGTGAAGAGACACCGCTTCGTTGCTTCAGTCAAGGACTT 491689 Query 109557 TTTACAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCAA 109616 | || ||||| ||||| || || || |||||||||||||| || || || || || Sbjct 491688 CCTCGAAACCTGGAAGTTCTTCGATGGTGTTGACATTGATTGGGAATTCCCTGGTGGTAA 491629 Query 109617 GGGTGCCAATCCGAGTCTCGGCGACGC--AACGCGCGACAGCAAAACGTACATTGCGTTG 109674 || ||||| || |||||| | | | || || | || ||||||| | || Sbjct 491628 AGGAGCCAACCCTGATCTCGGTGCCCCTGAAGACG-GTCACATCTACGTACA----GCTG 491574 Query 109675 TTAAAAGAGTTGCGCGCCATGTTGGACGACTTGCAAACGGCC---ACCAACAAAACGTAC 109731 | || || | | |||||| |||| || | ||| || || | |||| Sbjct 491573 ATGAAGGAACTCAGACAGATGTTGAACGA---GCTTTCTGCCAAGACTGGTAAGAAGTAC 491517 Query 109732 GAATTGACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCG 109791 |||||||| || || ||| |||||| || || || | || || || ||| Sbjct 491516 GAATTGACTTCTGCTATCAGCTCCGGTTGGGACAAGATCCAGGTTGTGGACTACAAAGAA 491457 Query 109792 GCGCAACAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCA 109851 || || || || |||| | || || || |||| || || ||||| ||||||||||| Sbjct 491456 GCTCAGCAGTACATGGATCACATCTTCTTGATGAGTTATGACTTCAAGGGCGCTTGGTCT 491397 Query 109852 AAC-ACGGACTTAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATT 109910 ||| || |||| ||| | || | | ||||||| || | ||||| || || || Sbjct 491396 AACGACACACTT-GGCCACCAGGCAGGTTTGTACGCCCCAGCATGGAACCCCAAGGAGAC 491338 Query 109911 GTACACGACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTCGCCTaaaaaaaT 109970 ||||| || || | | |||||| ||||| ||| || || || || || Sbjct 491337 TTACACAACTGACTTCGGTGTCAAATTCCTGTTGGCTCAAGGTGTTAGCCCCAAGAAGAT 491278 Query 109971 TATAATTGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCGTCGTGCACG---CCGACGA 110027 | | |||| || || ||||| || || |||||||| || ||| ||| | | || Sbjct 491277 TGTCGTTGGTGTTGCTATGTATGGACGAGGCTGGACTGGAGTC---AACGGTTACAAAGA 491221 Query 110028 CGCGAATCCGTTTTTGGGCATCGCCTCCGGTCCCGTGGAAGGCACTTGGGAAAACGGCGT 110087 | |||||||| || | || | |||||||| |||| |||||| | | || || Sbjct 491220 TGGCAATCCGTTCACTGGTGTAGCGACTGGTCCCGTTAAAGGAACTTGGCAGGATGGTGT 491161 Query 110088 GGTGGACTA 110096 ||||||||| Sbjct 491160 GGTGGACTA 491152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409648837392564