Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spodoptera_20frugiperda_20[genbank_20GCA_5F002213285.1_202017-06-30] 2,396 sequences; 514,225,903 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1772 123 3e-23 >seq1772 Length=243193 Score = 123 bits (136), Expect = 3e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838 |||||||| ||||| || | | ||||| ||||| || | ||| || || || ||||| Sbjct 41281 ATATATGTGTCAATAAGAAGAGAGTACATCTCAGAGTGTACATTCTCCATGGCTATCTGG 41222 Query 23839 AACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAA 23898 || ||||| || ||||||||||||| || |||||| || | | | || | || | | | Sbjct 41221 AAACCATAGAAGCATCTAGCTTCAGTCACTTGAACTTCTTGAGAGAAACGTTCAACCAGG 41162 Query 23899 TTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGT 23958 ||||| || ||||| ||||| ||||||||||||||| || |||| || ||||| || Sbjct 41161 TTTTCATTGACAATCCCATCGGAAGCAGCAAAGAAAGCCAGCACATGCTTGATAAAGTGC 41102 Query 23959 CTTTCA 23964 || ||| Sbjct 41101 CTCTCA 41096 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| ||| |||| ||||||| |||||||| || |||||||| || |||||||| Sbjct 41684 TCATCTCTAGATATCAGTTCATTACTGAATGTTAAACCAGGCATTAAACCACGTTTTTTC 41625 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 ||||| || || | ||||| || || |||||||| || || || || ||||| || Sbjct 41624 ATCCAGAAAATGGAGGCAAAGCTGCCTGAGAAGAAAATTCCTTCGACTGCAGCAAATGCG 41565 Query 23653 ACAAGACGTGTACCAAATGTTGCA 23676 | || || | ||||||||||| Sbjct 41564 ATAATTCGCTCAGCAAATGTTGCA 41541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521472381434400