Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06] 101,545 sequences; 113,565,242 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq87608 116 8e-21 seq94527 98.7 2e-15 seq97871 95.1 3e-14 seq60584 91.5 3e-13 >seq87608 Length=6889 Score = 116 bits (128), Expect = 8e-21 Identities = 327/494 (66%), Gaps = 6/494 (1%) Strand=Plus/Minus Query 281541 TTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATA 281600 || ||||||| ||| | ||||||||| |||| || ||||| |||||| || || ||| Sbjct 3160 TTTTCTACGACTTCTCTTGGATTATAATTGGGTATTTTAGTGCTCCAACCCGTGCCGATA 3101 Query 281601 CCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATT 281660 || ||||| |||| || |||| | || || |||||| |||| || || ||| Sbjct 3100 CCCTCACCGCCATTCACCAGAACCATCGGAAGTATTGGCACATAAAATTCAGGCTCGATT 3041 Query 281661 TTATCACCATCATCATACAAATACTTCAGAAGGTTATCATC-TGTATCGACGAAAACCTG 281719 || | ||| || || | ||| || ||||| ||||| ||| ||| ||||| | Sbjct 3040 TTCAAATTATCGTCGTAAAGATAATTGAGAAGCGGGTCATCCTGTGGCGA-GAAAATTTT 2982 Query 281720 TCGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACC 281779 ||| | | ||| | || | || |||||||| | | |||||| |||||| || || Sbjct 2981 TCGGGCCAAAGGACTAAGCATTGTAAAGATATAACGAGGACTCGCAGCGTCTTTTCCGCC 2922 Query 281780 CTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGAC 281839 ||| || | || ||||||||||| ||| | ||||||| |||||||| ||||| Sbjct 2921 CTGAAGTCGCGTTCCAAACTGACCGATCGGTTGAAGTAAGTTAATATTATTGCTGCCGAC 2862 Query 281840 GTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGC 281899 || | || || | |||| || || | || || | || ||||| || || || Sbjct 2861 ATAGTTTTGGGCTAAATTGATAATAGTTGACATTAGAGACGCTTCTCCGTGATGGTATGC 2802 Query 281900 GCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCG 281959 || ||| | || |||| | ||||| || ||||| ||| | | ||| || Sbjct 2801 CGAATGCTCGCCCACCGAACCCGCCAGTTGTGCCACTTTCACCTCTCTTTTATCGTTACG 2742 Query 281960 TTTGAAAGCGCAATATA-AT-ACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGAC 282017 || ||||| | |||| || ||||||| || ||| || |||||||| | | || Sbjct 2741 CTT-AAAGC-AAGTATACATCACTTTTCTCTGTCCAGGTTTCAAACCATCCATCAGTGAT 2684 Query 282018 GGAATGCTGCGTTC 282031 |||||| ||||| Sbjct 2683 GGAATGGACCGTTC 2670 >seq94527 Length=5139 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 603 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 662 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 663 CCCACGTTGGGC 674 >seq97871 Length=2263 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||| | ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 1571 GCCTGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1630 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1631 CCCACGTTGGGC 1642 >seq60584 Length=2627 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 2088 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2147 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 2148 CCCCACGTTGGGC 2160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056447723043350