Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06]
101,545 sequences; 113,565,242 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq74163 102 1e-16
seq74164 96.9 5e-15
seq32606 96.9 5e-15
seq40818 95.1 2e-14
seq82108 89.7 8e-13
>seq74163
Length=404
Score = 102 bits (112), Expect = 1e-16
Identities = 136/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 10365 GCATATGATTATATTGTTTCAGCACATGATAAAAAATTAATAAAAACTGATTTAATTATA 10424
||| | |||| | ||||||| ||| | | |||||| | |||||||||||| ||
Sbjct 97 GCAGAAGATTGTGTTGTTTCTGCAAACTCCAGAAAATTGGTTAAAACTGATTTAGCATTA 156
Query 10425 GAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAA 10484
|||||| || |||| ||||| |||| | |||| || |||| ||||| |||||
Sbjct 157 GAAATTGCTGTTGGATATTATGGAAGAATTTCTCCAAGGTCTGGGTTAGCGTTAAATTGT 216
Query 10485 TTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATA 10544
||||||| | | || |||||||| ||| ||||||| ||||| ||| ||||||||
Sbjct 217 TTTATTGGTGTATTAGGAGGAGTAATAGACTCAGATTATCGAGGAGCTGTAGGAGTAATT 276
Query 10545 TTATTTAAT 10553
||| | |||
Sbjct 277 TTAGTAAAT 285
>seq74164
Length=625
Score = 96.9 bits (106), Expect = 5e-15
Identities = 146/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 10364 TGCATATGATTATATTGTTTCAGCACATGATAAAAAATTAATAAAAACTGATTTAATTAT 10423
|||| | |||| | ||||||| ||| | | |||||| || ||||| ||| | |
Sbjct 215 TGCAGAAGATTGTGTTGTTTCTGCAAACTCCAGAAAATTGATTAAAACAGATATTGCATT 274
Query 10424 AGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAA 10483
| |||||||| |||| ||||| |||| ||||||| || |||| |||||| |||||||
Sbjct 275 ACAAATTCCTGTTGGATTTTATGGAAGAATAGCTCCTAGGTCTGGTTTAGCGTTAAATAA 334
Query 10484 ATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAAT 10543
|||||| || || ||||| | || |||||||||||| ||| ||||| ||
Sbjct 335 TTTTATTAGCGTTCTAGGAGGAGTGGTCGATTCTGATTATAGAGGAGCTGTTGGAGTCAT 394
Query 10544 ATTATTTAATCATTCTAATGAAGATTTT 10571
||| | ||| | | || |||||||
Sbjct 395 TTTAGTAAATTTTGATTATACAGATTTT 422
>seq32606
Length=433
Score = 96.9 bits (106), Expect = 5e-15
Identities = 92/118 (78%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 146063 CTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTA 146122
|||| |||||||| | |||| | || ||| ||||||||||||| |||| ||||| |
Sbjct 277 CTTAGAACCAAATGGAGAGTACAATCCTTACATATATTATAATCGGAAATTTTTCTGTCA 218
Query 146123 TCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTT 146180
| || ||||||||||| ||||||| | | |||||| | ||||||||||||||||
Sbjct 217 TTTTCAAATTGTTTTCCTCCAAAAATAAGCCGTTGCTGTTTTGGAGGAATTCCTTCTT 160
>seq40818
Length=1121
Score = 95.1 bits (104), Expect = 2e-14
Identities = 158/227 (70%), Gaps = 6/227 (3%)
Strand=Plus/Plus
Query 10395 AAAAAATTAATAAAAACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTA 10454
||| ||||||| || |||||| | | | ||||||||||||| ||||| | ||| |
Sbjct 385 AAAGAATTAATTAAGACTGATATTGCTGTTCAAATTCCTAAAGGTTGTTAAGGAAGGATT 444
Query 10455 GCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGA---GTAATT 10511
|| |||||| |||||| ||||| ||||| ||||| | |||| |||||
Sbjct 445 GCGTAGAGATCTAGTTTAGCATGGAATAATTTTAT---TATTGTGGTTGGAGGTGTAATA 501
Query 10512 GACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTT 10571
|| |||| |||||||||||| | | |||||||| | ||||| | | |||| | |
Sbjct 502 GATGAAGGATATAGAGGAAATATTTGCGTAATATTGTATAATCTTGGAGAAAAAGAATAT 561
Query 10572 ATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618
| | | |||| || | ||| | || | ||||| |||||||||||
Sbjct 562 AAAGTTAATAAGGGTGCCAGAGTTGCTAAGTTAATTTGTGAAAAAAT 608
>seq82108
Length=1029
Score = 89.7 bits (98), Expect = 8e-13
Identities = 148/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 10340 ATCTGCAGGAATGGATTTAAAAAGTGCATATGATTATATTGTTTCAGCACATGATAAAAA 10399
||| || ||| |||||||| ||| | |||| | | || || ||| | | |||
Sbjct 492 ATCAGCTGGATTGGATTTATTTTCAGCAGAAGATTGTGTAGTATCTGCAAACTCCAGAAA 433
Query 10400 ATTAATAAAAACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCC 10459
||| || ||||| |||||| || ||||||| |||| ||||| ||| | ||||
Sbjct 432 ATTGATCAAAACAGATTTAGCATTACAAATTCCGGTTGGATATTATGGTAGAATTTCTCC 373
Query 10460 CAGATCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGA 10519
|| |||| ||||||| |||| | ||||||| || || ||||| | ||| |||
Sbjct 372 AAGGTCTGGTTTAGCTTTAAACAGTTTTATTGGGGTTTTAGGAGGAGTGTTAGACTCAGA 313
Query 10520 TTATAGAGGAAATGTGGGAGTAATATTATTTAAT 10553
|||||||||| ||| ||||| || ||| | |||
Sbjct 312 TTATAGAGGAGCTGTTGGAGTTATTTTAGTCAAT 279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 742582632646400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |