Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06] 101,545 sequences; 113,565,242 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq74163 102 1e-16 seq74164 96.9 5e-15 seq32606 96.9 5e-15 seq40818 95.1 2e-14 seq82108 89.7 8e-13 >seq74163 Length=404 Score = 102 bits (112), Expect = 1e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 10365 GCATATGATTATATTGTTTCAGCACATGATAAAAAATTAATAAAAACTGATTTAATTATA 10424 ||| | |||| | ||||||| ||| | | |||||| | |||||||||||| || Sbjct 97 GCAGAAGATTGTGTTGTTTCTGCAAACTCCAGAAAATTGGTTAAAACTGATTTAGCATTA 156 Query 10425 GAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAA 10484 |||||| || |||| ||||| |||| | |||| || |||| ||||| ||||| Sbjct 157 GAAATTGCTGTTGGATATTATGGAAGAATTTCTCCAAGGTCTGGGTTAGCGTTAAATTGT 216 Query 10485 TTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATA 10544 ||||||| | | || |||||||| ||| ||||||| ||||| ||| |||||||| Sbjct 217 TTTATTGGTGTATTAGGAGGAGTAATAGACTCAGATTATCGAGGAGCTGTAGGAGTAATT 276 Query 10545 TTATTTAAT 10553 ||| | ||| Sbjct 277 TTAGTAAAT 285 >seq74164 Length=625 Score = 96.9 bits (106), Expect = 5e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 10364 TGCATATGATTATATTGTTTCAGCACATGATAAAAAATTAATAAAAACTGATTTAATTAT 10423 |||| | |||| | ||||||| ||| | | |||||| || ||||| ||| | | Sbjct 215 TGCAGAAGATTGTGTTGTTTCTGCAAACTCCAGAAAATTGATTAAAACAGATATTGCATT 274 Query 10424 AGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAA 10483 | |||||||| |||| ||||| |||| ||||||| || |||| |||||| ||||||| Sbjct 275 ACAAATTCCTGTTGGATTTTATGGAAGAATAGCTCCTAGGTCTGGTTTAGCGTTAAATAA 334 Query 10484 ATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAAT 10543 |||||| || || ||||| | || |||||||||||| ||| ||||| || Sbjct 335 TTTTATTAGCGTTCTAGGAGGAGTGGTCGATTCTGATTATAGAGGAGCTGTTGGAGTCAT 394 Query 10544 ATTATTTAATCATTCTAATGAAGATTTT 10571 ||| | ||| | | || ||||||| Sbjct 395 TTTAGTAAATTTTGATTATACAGATTTT 422 >seq32606 Length=433 Score = 96.9 bits (106), Expect = 5e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 146063 CTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTA 146122 |||| |||||||| | |||| | || ||| ||||||||||||| |||| ||||| | Sbjct 277 CTTAGAACCAAATGGAGAGTACAATCCTTACATATATTATAATCGGAAATTTTTCTGTCA 218 Query 146123 TCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTT 146180 | || ||||||||||| ||||||| | | |||||| | |||||||||||||||| Sbjct 217 TTTTCAAATTGTTTTCCTCCAAAAATAAGCCGTTGCTGTTTTGGAGGAATTCCTTCTT 160 >seq40818 Length=1121 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 10395 AAAAAATTAATAAAAACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTA 10454 ||| ||||||| || |||||| | | | ||||||||||||| ||||| | ||| | Sbjct 385 AAAGAATTAATTAAGACTGATATTGCTGTTCAAATTCCTAAAGGTTGTTAAGGAAGGATT 444 Query 10455 GCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGA---GTAATT 10511 || |||||| |||||| ||||| ||||| ||||| | |||| ||||| Sbjct 445 GCGTAGAGATCTAGTTTAGCATGGAATAATTTTAT---TATTGTGGTTGGAGGTGTAATA 501 Query 10512 GACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTT 10571 || |||| |||||||||||| | | |||||||| | ||||| | | |||| | | Sbjct 502 GATGAAGGATATAGAGGAAATATTTGCGTAATATTGTATAATCTTGGAGAAAAAGAATAT 561 Query 10572 ATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618 | | | |||| || | ||| | || | ||||| ||||||||||| Sbjct 562 AAAGTTAATAAGGGTGCCAGAGTTGCTAAGTTAATTTGTGAAAAAAT 608 >seq82108 Length=1029 Score = 89.7 bits (98), Expect = 8e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 10340 ATCTGCAGGAATGGATTTAAAAAGTGCATATGATTATATTGTTTCAGCACATGATAAAAA 10399 ||| || ||| |||||||| ||| | |||| | | || || ||| | | ||| Sbjct 492 ATCAGCTGGATTGGATTTATTTTCAGCAGAAGATTGTGTAGTATCTGCAAACTCCAGAAA 433 Query 10400 ATTAATAAAAACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCC 10459 ||| || ||||| |||||| || ||||||| |||| ||||| ||| | |||| Sbjct 432 ATTGATCAAAACAGATTTAGCATTACAAATTCCGGTTGGATATTATGGTAGAATTTCTCC 373 Query 10460 CAGATCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGA 10519 || |||| ||||||| |||| | ||||||| || || ||||| | ||| ||| Sbjct 372 AAGGTCTGGTTTAGCTTTAAACAGTTTTATTGGGGTTTTAGGAGGAGTGTTAGACTCAGA 313 Query 10520 TTATAGAGGAAATGTGGGAGTAATATTATTTAAT 10553 |||||||||| ||| ||||| || ||| | ||| Sbjct 312 TTATAGAGGAGCTGTTGGAGTTATTTTAGTCAAT 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742582632646400