Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06] 101,545 sequences; 113,565,242 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq52387 107 2e-18 >seq52387 Length=8210 Score = 107 bits (118), Expect = 2e-18 Identities = 135/185 (73%), Gaps = 8/185 (4%) Strand=Plus/Minus Query 20209 CGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAA 20268 || |||||||| ||||||||||| || ||||| ||||| ||| |||| ||||| ||||| Sbjct 1909 CGACAAGAGGGAGATTTGGGTCCCGTTTATGGGTTTCAGTGGCGACACTTTGGCGCTGAT 1850 Query 20269 TATGTTGACATGAACACAAATTATTTTGGACAA----GGAGTAGATCAATTACAAAATGT 20324 ||| | || ||||||| | |||| | ||| || || ||||| || | ||||| Sbjct 1849 TATATCGATATGAACAGAGATTA----CGCCAATTTCGGTGTCGATCAGTTGAACAATGT 1794 Query 20325 TATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGC 20384 ||| ||| || | ||| || || || ||||| |||| ||| |||| | ||||| || Sbjct 1793 TATCAATACTATCAGAACCAATCCTAATGACAGGCGAATGATTATATGTTCGTGGAATGC 1734 Query 20385 TAAAG 20389 |||| Sbjct 1733 AAAAG 1729 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 20490 GGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 |||| ||||||| || || ||||| ||||||||| | || | || | |||||||| || Sbjct 1395 GGGATTGGGTGTACCGTTTAATATCGCAAGTTATTCATTGTTGACTCACATGATTGCGCA 1336 Query 20550 TGTTACAGATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCT 20609 | || | | | || | |||||||| |||| ||||| || ||||||||||| || || Sbjct 1335 CATAACTGGTATGAATAGCGGTGACTTTATCCATACCATCGGTGACGCGCATATATATCT 1276 Query 20610 TAATCATATAGAACC 20624 |||| || ||||| Sbjct 1275 CGATCACATCGAACC 1261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398689977990025