Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06] 101,545 sequences; 113,565,242 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq100917 114 1e-20 seq95989 93.3 4e-14 seq39385 86.0 6e-12 >seq100917 Length=15418 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| | |||| || | ||||| ||| || ||||| ||||||||||||||||| Sbjct 7787 GCCGCCTCTCAGGCGCAGCACCAGATGAAGTGTCGACTCTTTCTGTATGTTGTAATCGCT 7728 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| || |||||| | ||||| ||||| | |||| || |||||||| ||||| Sbjct 7727 TAGTGTTCTTCCGTCTTCTAACTGTTTGCCAGCGAATATCAACCGCTGCTGATCAGGAGG 7668 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| ||| || || | | || | ||||||| || || || Sbjct 7667 AATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCGATGGTGTCCGACGGCTCCAC 7608 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | ||||| || || | ||| || |||||||| ||||| Sbjct 7607 TTCGAGCGTGATTGTCTTACCAGTGAGTGTCTTCACGAATATCTGCAT 7560 >seq95989 Length=12046 Score = 93.3 bits (102), Expect = 4e-14 Identities = 94/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | ||| ||||||| |||||||||||||| ||||| ||||| || Sbjct 11928 CCTCCTCTGAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATGTTATAATCACTT 11987 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | || || |||||||| || || | |||| ||||||||||||||||| Sbjct 11988 AAAGTGCGTCCA-TCCTCTAGTTGTTTGCCTGCGAATATCAATCGTTGCTGATCGGGAGG 12046 >seq39385 Length=5141 Score = 86.0 bits (94), Expect = 6e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 142997 TTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATC 143056 || || || || |||||||| | ||| || ||||| |||||||| ||||| ||||| Sbjct 206 TTCTGAATATTATAATCGCTGAGTGTTCTTCCATCTTCCAGTTGTTTGCCAGCGAAGATC 147 Query 143057 AGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 || || |||||||||||||| |||||||| ||||| Sbjct 146 AGTCGCTGCTGATCGGGAGGAATGCCTTCCTTGTC 112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506370840284400