Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06] 101,545 sequences; 113,565,242 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq67252 324 1e-83 seq96803 295 6e-75 seq95739 288 9e-73 seq50692 174 1e-38 seq87112 98.7 9e-16 seq77187 82.4 7e-11 >seq67252 Length=1665 Score = 324 bits (358), Expect = 1e-83 Identities = 586/854 (69%), Gaps = 26/854 (3%) Strand=Plus/Plus Query 12861 TTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTT 12920 ||||||||||||| ||| || |||| ||||| || | || || | || || | || Sbjct 498 TTTGATATTCGCTCACTTTTATTTCGAAAAAATTACTCTTATTATCAATTGATATTTGTT 557 Query 12921 CCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACA 12980 |||||||||| || ||||||| |||| |||| | || |||| || || | | ||| | Sbjct 558 CCATAAAATCAAATGGATTTTCCGAATAATAATGATTAATACATCCAAAATTTTTTAAAA 617 Query 12981 ATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 13040 | | ||||| | || || ||||| ||||||||||||||||||||||||||||| Sbjct 618 GTTTATCAGCTATGAATTCAATGTATAATTTCATTAAATCACAGTTCATTCCTATTANNN 677 Query 13041 TTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCG---ATAACTA 13097 |||| ||||| | |||||| ||| ||| ||||| |||| | Sbjct 678 N--------------CTGTCAAAAATTCTTTTTCAATAATAACAGCTTCCTGTATAATTT 723 Query 13098 TGTCTCTTATTACGTTCTCTAATGGAGGA-TTTGATAGATGCTTAAACATCATACATGCA 13156 | || ||| || | || ||| ||| || || ||||| | | ||||||| Sbjct 724 TCAAGATT-TTA--TTAT-TATTGGGTTTGTTTTTTAAATATTTAAATAATAGACATGCA 779 Query 13157 AAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGC 13216 ||||||||||| | ||||||||||| || || ||||| |||| ||| Sbjct 780 AAATCACAGTGAAGGCCTTCATCTCTTGAAATAAGTTCGTTACTTTGCGTTAAACCATTT 839 Query 13217 ATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCT 13276 | || || |||| ||| |||||| | ||||||||||| ||||| |||||| |||||| Sbjct 840 AAAATTCCACGTTCTTTTATCCAATAAATAGCAGCAAATGAACCACTAAAAAAAATTCCT 899 Query 13277 TCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCAC 13336 ||||| || ||||| || | | || || ||| | || || ||| | |||||| Sbjct 900 TCAACAGCAGCAAATGCCACGAGTCTCTCTCCAAAGCTAACATGTTTTTCATTTATCCAT 959 Query 13337 TTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA 13396 ||| ||||| | ||||||| ||||| ||| | ||||| | |||| || | ||| Sbjct 960 TTTAATGCCCATTCGGCTTTTTTTTTAATGCAACTAATATTATGGATTGAATTTATTAAG 1019 Query 13397 TAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAA 13456 ||||| || | | ||| ||| |||| | ||||| || ||||||||||| Sbjct 1020 GTATTTTGTTTATCTTTATCTTTAATGAGTGTATACAATAATAAACTGTACATTTCTGAG 1079 Query 13457 TGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACT 13516 || |||||||| | || ||||| |||||||| || ||||| || || | ||||| Sbjct 1080 TGTATATTTTCAACTGCAATTTGCAAACCATAGAAGCATCTTGCTTCACTAATTTGAACA 1139 Query 13517 TCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaa 13576 || | ||||||||||||| || |||||||| ||||| |||||||| | ||||||||| Sbjct 1140 TCACATAAAAATCTTTCTGCCAAATTTTCGTTGACTATTCCGTCACTTGTTGCAAAAAAA 1199 Query 13577 GCAAGTATGTGCTTAATAAAttttttttCGTTTT--CTGACAACTTTAACCAATCTGGAA 13634 || || || | || ||| | | |||| |||| || | || ||||||||| Sbjct 1200 GCGAGAATATAAGAAAAAAAGTGTCTTTCATTTTCACTTAGAA--GTAACCAATCATTGT 1257 Query 13635 AATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACA 13694 |||||||| |||||||| || || || ||||| | | |||| | ||| || ||||||| Sbjct 1258 AATCTTTTCCCAAATCTACTTCTTCCACAGTCCATATACAAGCCAAAGCTTTTTTATACA 1317 Query 13695 TCATCCATATATCC 13708 | |||| | |||| Sbjct 1318 TATTCCACAAATCC 1331 >seq96803 Length=7468 Score = 295 bits (326), Expect = 6e-75 Identities = 604/886 (68%), Gaps = 20/886 (2%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 |||||||||||| | ||||| |||||| ||||| || |||||||||| || ||||| | Sbjct 4143 TTTTTGATATTCTCCAACTCGTTTTTCGAAAAAATTACTTTTTCCTTCCAATGAAATTTG 4084 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT-ACACCCTAATTCTAGTA 12977 ||||||||||| ||||| |||| ||| | | ||||||| ||| ||||||| | | Sbjct 4083 CTCCATAAAATCAAAAGGGTTTTCCGACTGAAA-TATTTTTGGACAATCTAATTCCATGA 4025 Query 12978 ACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTA 13037 | | | |||||||| | || |||||||||||||| | || ||||| || |||| Sbjct 4024 GAAGTTTATCAGCAACGTATTCAATGTACTGTTTCATGAGTGAGCAATTCATGCCAATTA 3965 Query 13038 ATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTA 13097 | || |||| ||| || || ||| | || ||| || ||| ||||| || | Sbjct 3964 AACGAACTGGCAGAGCATCCACTAGAAATTCTTGTTCAATTAAAACGGCTTCTCGAATAA 3905 Query 13098 TGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAG--ATGCTT-----AAACATCATA 13150 | || |||| | ||| || |||| | ||| | ||| | | | Sbjct 3904 TTTCGACTATTTTATCCTCGCTCGG----TTTGTTGCGAATGTATCGTCGAAATACTAGA 3849 Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 |||||||||||||| || ||||||||||| | | ||||| || || ||| || | | Sbjct 3848 CATGCAAAATCACAATGTAATCCTTCATCACGAGAAATTAGTTCATTGCTAAAAGTCAAA 3789 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270 || | | | || |||| ||||||||||||||||| ||||||||||| ||||||| Sbjct 3788 CCACGTAATATTCCGCGTTGTTTAATCCAAAATATAGATGCAAACGAACCACTAAAAAAT 3729 Query 13271 ATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA-CTATTTTTACTCTC 13329 || |||||||| || || || || | || | |||| || | | | ||| || | | Sbjct 3728 ATCCCTTCAACAGCAGCGAATGCAACTAAACGTTCAGCAAAAGAAGCTAAATT-ATTAGA 3670 Query 13330 TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTT 13389 ||||| | ||||| | ||| |||| || || || || |||| ||||| || Sbjct 3669 AATCCAGCGTAATGCCCATTGTGCCTTTTTCTTGACACATGGTATCGTTTCAATTGCATT 3610 Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACAT 13449 ||||||| || |||| || |||| |||||| || | | | ||| |||||| Sbjct 3609 AAATAAAAGCATTCTTTCTTTTTTGTCATCAATATACGTTTGCAAAAGTAATGAATACAT 3550 Query 13450 TTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATAC 13509 ||||||||| | ||| || ||||| ||||| || |||||||| || | || |||| || Sbjct 3549 TTCTGAATGCACATTCTCAATCGCAATTTGAAATCCATAAAAGCAACGTGCTTCTGTAAC 3490 Query 13510 CTGAACTTCGGAGTA-AAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 |||||| || ||| ||||| ||| || | ||||| ||||| | || |||||||| | Sbjct 3489 CTGAACCTC-TCGTATAAATCGTTCAGCAAGATTTTCATTAACAACTCCATCACTAGCGG 3431 Query 13569 CaaaaaaaGCAAGTATGTGC-TTAATAAA--ttttttttCGTTTTCTGACAACTTTAACC 13625 ||||||| ||||| || | | ||| ||| | || || | | | || | || Sbjct 3430 CAAAAAATGCAAGAATATACGATAAGAAACGTCGTTCATCCGGGTTTAATTTATTGATCC 3371 Query 13626 AATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 |||| | | ||| | |||||| || ||||| || |||||||| ||||| ||| | Sbjct 3370 AATCAGCACGATCACGTCCTAAATCAACTTCCTCTACTGTCCAAAATGAAGCTTGAGCTT 3311 Query 13686 TCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAAC 13731 | || ||||| ||||| ||| | ||| | | |||||||| || Sbjct 3310 TTTTGTACATTTGCCATAAATCGTAATATTCTACTGGAAACACCAC 3265 >seq95739 Length=7868 Score = 288 bits (318), Expect = 9e-73 Identities = 622/911 (68%), Gaps = 42/911 (5%) Strand=Plus/Plus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 |||||||| | ||||||||| || | |||| ||||||| ||||| || |||||||| Sbjct 301 GACATAACTAAATGTTTTTGATACTCTCCAACTTTTTTTTCGAAAAAATTGCTTTTTCCT 360 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTT-TACA 12963 || || ||||||| ||||||||||| || ||||||| | ||| | ||||||| ||| Sbjct 361 TCCAATGAAATATGCTCCATAAAATCAAATGGATTTTCCACGCAA-AATATTTTTGGACA 419 Query 12964 CCCTAATTCTAGTAACAATC-TGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCAC 13022 | ||||| | ||| || | | || |||||||| || |||||||||||||| | || Sbjct 420 TTCCAATTC-AATAAGAAGCTTATCGGCAACAAATTCAATGTACTGTTTCATAAGCGAAC 478 Query 13023 AGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAA 13082 | ||||| || ||||| || || | || || ||| ||| | || ||| || || Sbjct 479 AATTCATGCCGATTAAAGAAACTGGTAATGCATCAATTAGAAATTCTTGTTCAATTAAAA 538 Query 13083 CTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGG--AGGATT-----TGATAGA 13135 | ||||| || || || || ||| |||||| ||| ||| || |||| | Sbjct 539 CGGCTTCTCGAATAATTTCGCTAATT---TTCTCT--TGGCTAGGTTTGTAGCGGATATA 593 Query 13136 T-GCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTC 13194 | | ||| | | ||||||||| |||||||| | ||||||||| | | |||| || Sbjct 594 TCGACGAAATACTAGACATGCAAAGTCACAGTGTAGTCCTTCATCACGAGAGATTAATTC 653 Query 13195 GTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA 13254 || ||| || | ||| | || | || |||| ||| ||||||||||| || ||||| Sbjct 654 ATTGCTAAAAGTCAAACCAGACAGTATACCACGTTGTTTGATCCAAAATATGGCCGCAAA 713 Query 13255 CGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT 13314 ||||| |||||||| ||||| || || ||||| || | || | |||| | ||| Sbjct 714 GGAACCACTGAAAAATATACCTTCGACAGCAGCAAATGCAACTAAACGTTCAGAAAACGA 773 Query 13315 ACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374 | | |||| ||||| | | ||| | |||||| | || || || || Sbjct 774 ATCTGTACTACTTGAAATCCAGCGTAATGACCACTGAGCTTTTCGCTTGACACATGGCAA 833 Query 13375 ATTTTCTATTGCGTTAAATAAA---TAAtttttttCCTTACTGTCTAAAATATAAGTATC 13431 |||| ||||| ||||||||| || || ||| || | || ||| || || | Sbjct 834 TGTTTCGATTGCATTAAATAAAAGCAAACGTTGTTCGTTGCAATC---AATGTATGTTTG 890 Query 13432 TATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAA 13491 | | | | ||||||||||||||| | |||||| || || ||||| || |||||||| Sbjct 891 CAAAAGCATGGAATACATTTCTGAATGCACATTTTCAATGGCAATTTGAAATCCATAAAA 950 Query 13492 ACATCTAGCCTCTGATACCTGAACTTCGGAGTA-AAATCTTTCTGCTAAGTTTTCGTTAA 13550 ||| | || |||| |||||||| || ||| ||||| |||||| | ||||| |||| Sbjct 951 ACAACGTGCTTCTGTAACCTGAACCTC-TCGTATAAATCGTTCTGCGAGATTTTCATTAA 1009 Query 13551 CTATCCCGTCACTAGCAGCaaaaaaaGCAAG--TATGTGCTTAATAAAttt--tttttCG 13606 | || || ||||| || |||||||| || || ||| || | || || || | | || Sbjct 1010 CAATTCCATCACTTGCGGCAAAAAATGCGAGAATATATGATAAAAAACGTTGCTCATCCG 1069 Query 13607 TTTTCTGACAACT--TTA-ACCAATCTGGAAA---ATCTTTTGATAAATCTACCTCCTCA 13660 || ||| | ||| |||||| ||| ||| | | ||| |||||||| Sbjct 1070 CGTT----CAATTTGTTATTCCAATC---AAATCGATCACGTCCAAGATCAACCTCCTCT 1122 Query 13661 ACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATG 13720 || |||||||| ||||| || || |||||||| ||||| ||| | ||| |||| Sbjct 1123 ACTGTCCAAAACGAAGCTTGAGATTTTTTATACATTTGCCATAAATCGTAATACTCAATT 1182 Query 13721 GGAAACACAAC 13731 ||||||||||| Sbjct 1183 GGAAACACAAC 1193 >seq50692 Length=412 Score = 174 bits (192), Expect = 1e-38 Identities = 292/416 (70%), Gaps = 16/416 (4%) Strand=Plus/Plus Query 13264 aaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTT 13323 |||||| ||||||||||| || ||||| || | || ||||| ||| | | || || Sbjct 3 AAAAAAAATTCCTTCAACAGCAGCAAAGGCAACTAATCTTTCTCCAAA---ATTAATTGA 59 Query 13324 ACTCTCT---ATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTC 13380 ||| || ||||| | ||| | |||||||| | ||| |||| | |||||| Sbjct 60 ACTTCCTTTAATCCAAGACAATGACCATTCTGCTTTTTTTCTAATACAGTCAAAATTTTC 119 Query 13381 TATTGCGTTAAATAAATAAtttttttCCTTACT--GTCTAAAATATAAGTATCTATCAAT 13438 |||||||| | ||| |||| ||| ||| | |||| ||| |||| | || | | Sbjct 120 AATTGCGTTTATCAAAATATTTCTTT--TTAATTCGTCTGTTATAAAAGTTTGTAAAAGT 177 Query 13439 AAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAA----AACA 13494 || ||||||||||| | |||| |||||| || || ||||| |||||||||| |||| Sbjct 178 AAACTATACATTTCAGCGTGAACATTTTCAATTGCAATTTGAAAACCATAAANAAAAACA 237 Query 13495 TCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTAT 13554 | ||| || || | || || |||||||||| |||||||||||||| || || Sbjct 238 ACGAGCTTCGTTTATTTTGACATCTCTTAAAAATCTTTCGGCTAAGTTTTCGTTTACAAT 297 Query 13555 CCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGA 13614 || ||||| | ||||| |||||||||||||| | ||| |||| ||| ||| | Sbjct 298 TCCATCACTTGTGGCAAAGAAAGCAAGTATGTGAGACAAAAAGTTTTGTTCATTTATAGT 357 Query 13615 CA-ACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAA 13669 | ||||| |||||| | |||||||| |||||| | ||| ||||| |||||| Sbjct 358 TAGACTTT-GCCAATCAGTCAAATCTTTACTTAAATCAATCTCTTCAACTGTCCAA 412 >seq87112 Length=790 Score = 98.7 bits (108), Expect = 9e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 52619 GTTATAGGGATAGACGAGGGACAGTTTTTTCCAGATATCGTTGAATTTTGTGATTATATG 52678 ||||| || ||||| || || ||||||||||||||| ||||||| |||| ||| | ||| Sbjct 558 GTTATTGGTATAGATGAAGGGCAGTTTTTTCCAGATGTCGTTGATTTTTCTGAAAAAATG 617 Query 52679 GCGAACAATGGAAAAATATTAATAGTTGCAGCTCTTGACGGTACATT 52725 || || | ||| |||||| | || ||||| |||||||| || ||||| Sbjct 618 GCTAATACTGGTAAAATAGTGATTGTTGCCGCTCTTGATGGGACATT 664 >seq77187 Length=4015 Score = 82.4 bits (90), Expect = 7e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 13439 AAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTA 13498 ||||||||||| || ||||||| |||||| || || ||||| || ||||||||||| | Sbjct 2704 AAGCTATACATCTCCGAATGAACATTTTCGATGGCGATTTGAAAGCCATAAAAACAACGC 2645 Query 13499 GCCTCTGATACCTGAACTTC 13518 || |||| ||| |||||||| Sbjct 2644 GCTTCTGTTACTTGAACTTC 2625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430449024936090