Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06] 101,545 sequences; 113,565,242 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq96803 205 2e-47 seq67252 178 3e-39 seq100917 167 5e-36 seq95739 150 4e-31 seq44500 107 4e-18 seq39385 87.8 4e-12 seq95281 86.0 1e-11 >seq96803 Length=7468 Score = 205 bits (226), Expect = 2e-47 Identities = 596/908 (66%), Gaps = 30/908 (3%) Strand=Plus/Plus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762 |||||| | |||||| || | || ||| ||||| ||||||||| | || ||| Sbjct 3262 TTTGTGGTGTTTCCAGTAGAATATTACGATTTATGGCAAATGTACAAAAAAGCTCAAGCT 3321 Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAG-----ATTGGAAAA 268817 || |||||||| ||||| ||||| ||| ||| ||| | || | |||||| | Sbjct 3322 TCATTTTGGACAGTAGAGGAAGTTGAT-----TTAGGACGTGATCGTGCTGATTGGATCA 3376 Query 268818 AT---TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTA 268874 || ||||| || || ||| || | || |||| ||||||||||| |||||||| | || Sbjct 3377 ATAAATTAAACCCGGATGAACGACGTTTCTTATCGTATATTCTTGCATTTTTTGCCGCTA 3436 Query 268875 GTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGT-CAAGAGGTACAGATTCCT 268933 ||||||| | ||||| |||||||| | || | | | | | | |||||| ||| || | Sbjct 3437 GTGATGGAGTTGTTAATGAAAATCTTGCTGA-ACGATTTATACGAGAGGTTCAGGTTACA 3495 Query 268934 GAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTAC 268993 ||||| | || ||||| ||||| || || || || || ||| | |||||||| ||||| Sbjct 3496 GAAGCACGTTGCTTTTATGGATTTCAAATTGCGATTGAGAATGTGCATTCAGAAATGTAT 3555 Query 268994 AGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCT 269053 || | | | || ||||| ||||| || || |||| | ||||| | | Sbjct 3556 TCATTACTTTTGCAAACGTATATTGATGACAAAAAAGAAAGAATGCTTTTATTTAATGCA 3615 Query 269054 ATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT---AAAC 269110 || ||| || ||||| | ||||| | ||||||| | ||||| || Sbjct 3616 ATTGAAACGATACCATGTGTCAAGAAAAAGGCACAATGGGCATTACGCTGGATTTCTAAT 3675 Query 269111 GATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170 || || ||| | ||| | |||||||| || || ||||| ||||| ||||| ||| Sbjct 3676 AATTTAGCTTCTTTTGCTGAACGTTTAGTTGCATTCGCTGCTGTTGAAGGGATATTTTTT 3735 Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACT 269230 || || ||||| |||| |||||| | || || | || | | | || || ||| Sbjct 3736 AGTGGTTCGTTTGCATCTATATTTTGGATTAAACAACGCGGAATATTACGTGGTTTGACT 3795 Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTA 269290 || || ||| | || | || ||||| ||||| || || || || ||| || || Sbjct 3796 TTTAGCAATGAACTAATTTCTCGTGATGAAGGATTACATTGTGATTTTGCATGTCTAGTA 3855 Query 269291 TTT--ACTAATTATCTTTCAC-ACAAACCTTCTCAAGATAGAGTATACGAAATTAT---A 269344 ||| || | || | ||| | ||||||| | |||| | || ||||||||| | Sbjct 3856 TTTCGACGA--TA-CATTCGCAACAAACCGAGCGAGGATAAAATAGTCGAAATTATTCGA 3912 Query 269345 GATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATC 269404 || ||| |||| | ||| |||||||||| ||| ||||| | | | | || Sbjct 3913 GA---AGCCGTTTTAATTGAACAAGAATTTCTAGTGGATGCTCTGCCAGTTCGTTTAATT 3969 Query 269405 GGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTG 269464 || |||||| || | |||| | | || ||| | | ||| |||||| | | || || Sbjct 3970 GGCATGAATTGCTCACTCATGAAACAGTACATTGAATACGTTGCTGATAAACTTCTCATG 4029 Query 269465 TCTTTAGGGTTTAGTAAAAAATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATA 269524 |||| | | |||| || | | ||||| || ||| |||||||||| | || Sbjct 4030 GAATTAGATTGTCCAAAAATATTTCAGTCGGAAAACCCTTTTGATTTTATGGAGCAAATT 4089 Query 269525 TCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGT 269584 ||||| ||||| || |||||| ||||| || || || | | ||||| ||| | Sbjct 4090 TCATTGGAAGGAAAAAGTAATTTTTTCGAAAAACGAGTTGGAGAATATCAAAAATCTAAT 4149 Query 269585 GTAATGTC 269592 |||||||| Sbjct 4150 GTAATGTC 4157 >seq67252 Length=1665 Score = 178 bits (196), Expect = 3e-39 Identities = 455/687 (66%), Gaps = 22/687 (3%) Strand=Plus/Minus Query 268699 TAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGT 268758 |||||||| |||| || || || ||| ||| | |||| ||||| ||| | || | Sbjct 1361 TAGATTTGCAATATACCCTATCGAGTATGTGGATTTGTGGAATATGTATAAAAAAGCTTT 1302 Query 268759 TGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAA 268818 |||| | | |||||||| |||||||||||| || | || | | |||||| | Sbjct 1301 GGCTTGTATATGGACTGTGGAAGAAGTAGATTTGGGAAAAGATTACAATGATTGGTTACT 1242 Query 268819 TTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGA 268878 | ||| | | |||||| ||| | ||||||||||| || ||||||||| ||||| Sbjct 1241 TCTAAGTGAAAATGAAAGACACTTTTTTTCTTATATTCTCGCTTTTTTTGCAACAAGTGA 1182 Query 268879 TGGTATCGTTAACGAAAATCTAGTAGAGAAG----TTCTGTCAAGAGGTACAGATTCCTG 268934 || || || ||||||||| | | ||| ||| || ||| || || || ||| || Sbjct 1181 CGGAATAGTCAACGAAAATTTGGCAGA-AAGATTTTTATGT---GATGTTCAAATTAGTG 1126 Query 268935 AAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACA 268994 |||| ||||| || || || || || || || | |||||||| || ||||| ||||||| Sbjct 1125 AAGCAAGATGCTTCTATGGTTTGCAAATTGCAGTTGAAAATATACACTCAGAAATGTACA 1066 Query 268995 GTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGAC--TATTTTCTTC 269052 || ||||| | |||| || | |||| || ||| |||| || || | ||| Sbjct 1065 GTTTATTATTGTATACACTCATTAAAGATA--AAGATAAACAAAATACCTTAATAAATTC 1008 Query 269053 TATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGA 269112 || | ||| || | | ||||||| | |||||||| | ||||||||||| || Sbjct 1007 AATCCATAATATTAGTTGCATTAAAAAAAAAGCCGAATGGGCATTAAAATGGATAAATGA 948 Query 269113 TA-----GCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTC 269167 | | || || ||||| || | || || ||||| ||||| ||||| || || Sbjct 947 AAAACATGTTAGCTTT--GGAGAGAGACTCGTGGCATTTGCTGCTGTTGAAGGAATTTTT 890 Query 269168 TTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTA 269227 ||| || || ||||| ||||| | |||| | || || | || || | || ||| Sbjct 889 TTTAGTGGTTCATTTGCTGCTATTTATTGGATAAAAGAACGTGGAATTTTAAATGGTTTA 830 Query 269228 ACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTA 269287 || ||||||| | || || || ||||| | ||||| || || || ||| || Sbjct 829 ACGCAAAGTAACGAACTTATTTCAAGAGATGAAGGCCTTCACTGTGATTTTGCATGTCTA 770 Query 269288 TTATTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGAT 269347 ||||| ||| ||| | | ||||||| | | ||| | | | |||||||| | Sbjct 769 TTATT---TAAATATTTAAAAAACAAACCCAATAATAATAAAATCTTGAAAATTATACAG 713 Query 269348 TCAGCTGTTTCTGTAGAAACAGAATTT 269374 ||||||| | | |||| ||||||| Sbjct 712 GAAGCTGTTATTATTGAAAAAGAATTT 686 >seq100917 Length=15418 Score = 167 bits (184), Expect = 5e-36 Identities = 176/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || | || || ||||| | ||| || |||||||| || || || || | Sbjct 7786 CCGCCTCTCAGGCGCAGCACCAGATGAAGTGTCGACTCTTTCTGTATGTTGTAATCGCTT 7727 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || ||||| |||||||||| ||||| ||||| || || | || ||| ||||||||||| Sbjct 7726 AGTGTTCTTCCGTCTTCTAACTGTTTGCCAGCGAATATCAACCGCTGCTGATCAGGAGGA 7667 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || || || ||||||||||| || || ||||| || | ||| || || || || Sbjct 7666 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCGATGGTGTCCGACGGCTCCACT 7607 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 || || || || ||||||||||| ||||| || || |||||||||||||||| Sbjct 7606 TCGAGCGTGATTGTCTTACCAGTGAGTGTCTTCACGAATATCTGCATTTTGT 7555 >seq95739 Length=7868 Score = 150 bits (166), Expect = 4e-31 Identities = 567/875 (65%), Gaps = 36/875 (4%) Strand=Plus/Minus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762 ||||| | |||||||| || || ||| ||||| ||||| ||| | | ||| Sbjct 1196 TTTGTTGTGTTTCCAATTGAGTATTACGATTTATGGCAAATGTATAAAAAATCTCAAGCT 1137 Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT--- 268819 || |||||||| ||||| || || ||||| ||| | | |||||||| || Sbjct 1136 TCGTTTTGGACAGTAGAGGAGGTTGATCTTGGACGTGATCGATTTGATTGGAATAACAAA 1077 Query 268820 TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGAT 268879 || || | || || | | ||| |||| |||||||| || |||||||| | |||||| Sbjct 1076 TTGAACGCGGATGAGCAACGTTTTTTATCATATATTCTCGCATTTTTTGCCGCAAGTGAT 1017 Query 268880 GGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGT-CAAGAGGTACAGATTCCTGAAGC 268938 || || ||||| |||||||| | ||| | | | | | | |||||| ||| || | ||||| Sbjct 1016 GGAATTGTTAATGAAAATCTCGCAGA-ACGATTTATACGAGAGGTTCAGGTTACAGAAGC 958 Query 268939 CAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCT 268998 | |||||||| ||||| || || || || |||||| | |||||||| ||||| || Sbjct 957 ACGTTGTTTTTATGGATTTCAAATTGCCATTGAAAATGTGCATTCAGAAATGTAT--TCC 900 Query 268999 AT--TAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTA-TTTTCTTCTAT 269055 || | | | || || || |||| ||||||| | | | | |||| || || Sbjct 899 ATGCTTTTGCAAACATACAT---TGATTGCAACGAACA---ACGTTTGCTTTTATTTAAT 846 Query 269056 GA----GAACTATGGAC-TGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATA--A 269108 | ||| || | | ||||| | |||| || | ||| | | ||||| | Sbjct 845 GCAATCGAAACATTGCCATGTGTCAAGCGAAAAGCTCAGTGGTCATTACGCTGGATTTCA 786 Query 269109 ACGA-TAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTC 269167 | | || | | | ||| | |||||||| ||||| ||||| ||||||||||| Sbjct 785 AGTAGTACAGATTCGTTTTCTGAACGTTTAGTTGCATTTGCTGCTGTCGAAGGTATATTT 726 Query 269168 TTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTA 269227 || || || ||||| || || |||||| | || || | || | || | || || Sbjct 725 TTCAGTGGTTCCTTTGCGGCCATATTTTGGATCAAACAACGTGGTATACTGTCTGGTTTG 666 Query 269228 ACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTA 269287 ||||| || ||||| || | || ||||| ||||||| ||||| || ||| || Sbjct 665 ACTTTTAGCAATGAATTAATCTCTCGTGATGAAGGACTACACTGTGACTTTGCATGTCTA 606 Query 269288 TTATTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTAT---A 269344 ||||| | ||| | |||||||| ||||| | | | ||||||||| | Sbjct 605 GTATTTCGTCGATATATCCGCTACAAACCTAGCCAAGAGAAAATTAGCGAAATTATTCGA 546 Query 269345 GATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATC 269404 || ||| |||| | ||| ||||||||||| || || || | | | | ||| Sbjct 545 GA---AGCCGTTTTAATTGAACAAGAATTTCTAATTGATGCATTACCAGTTTCTTTAATC 489 Query 269405 GGTATGAATAGCAAATCG---ATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTG 269461 || |||||| | ||| |||| | | || ||| | || || | |||| | || Sbjct 488 GGCATGAATTG---TTCGCTTATGAAACAGTACATTGAATTTGTTGCCGATAAGCTTCTT 432 Query 269462 GTGTCTTTAGGGTTTAGTAAAAAATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAAT 269521 | || | | | |||| || | ||| |||||||| ||| |||||||||| || Sbjct 431 ATTGAATTGGAATGTCCAAAAATATTTTGCGTGGAAAATCCATTTGATTTTATGGAGCAT 372 Query 269522 ATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAA 269556 || ||||| ||||| || ||||| ||||| || Sbjct 371 ATTTCATTGGAAGGAAAAAGCAATTTTTTCGAAAA 337 >seq44500 Length=545 Score = 107 bits (118), Expect = 4e-18 Identities = 149/210 (71%), Gaps = 9/210 (4%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || || || | ||| | || |||| ||| || || ||| || ||||| || ||||| Sbjct 210 ACCAGTTGAAGTGTGCAATCCTTCTCAATGTTGTAATCATTGAGTGTTCTTCCATCTTCC 151 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 |||||| | || ||||| || || |||| ||||| ||||| || ||||| || |||| | Sbjct 150 AGTTGTCTGCCGGCAAAGATCAGTATCTGCTGATCGGGAGGAATGCCTTCCTTTTCCTCA 91 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||||| || ||||| || | || |||||| ||||| || || || ||| Sbjct 90 ATCTTTGTCTTGACATTCTCGATGGAATCGCTTGGTTCCACTTCCAG---------CTTT 40 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| | || |||| | |||||||||||| Sbjct 39 CCAATCAGATTTTTGATGAATATCTGCATT 10 >seq39385 Length=5141 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 |||||||||||||| || || ||||| || ||||| |||||||| ||||| || || Sbjct 206 TTCTGAATATTATAATCGCTGAGTGTTCTTCCATCTTCCAGTTGTTTGCCAGCGAAGATC 147 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAAT 104472 || | ||| ||||| ||||| || ||||| || |||||||| Sbjct 146 AGTCGCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAAT 106 >seq95281 Length=916 Score = 86.0 bits (94), Expect = 1e-11 Identities = 129/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 65727 TTTTCAAATATGATTTGAGCTACTCTATCGCC---TTTACATATATTAAACTCCTCCTTA 65783 || || ||||| | ||| || |||||||| || |||| || | ||| || | | Sbjct 687 TTCTCCAATATTAGTTGTGCAACTCTATCACCCTGTTTA---ATTTCAAAATCTTTTTCT 743 Query 65784 CCGAAATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAATCTATAACACCAGCA 65843 || |||||||| || ||||||||||| ||| |||| |||| ||||||||||||||| Sbjct 744 CCATGATTAAATAACAAAATTCCAACATTTCCTTTATAATCTGGATCTATAACACCAGCC 803 Query 65844 CCTACATCTATAAAGTAATTATACGCTAATCCAGATCGGGGAGCTATTCTACCATAATAT 65903 |||| || | | ||| | ||||| ||||| | || || |||| |||||| || Sbjct 804 AAAACATTTAAAGAATAAGCTAATGCTAACCCAGACCTAGGTGCGATTCGACCATAGCAT 863 Query 65904 CC 65905 || Sbjct 864 CC 865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149900378508860