Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06] 101,545 sequences; 113,565,242 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq61177 145 1e-30 seq83881 136 6e-28 seq58543 80.6 4e-11 >seq61177 Length=491 Score = 145 bits (160), Expect = 1e-30 Identities = 193/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || ||||| || | | |||||| ||||| || || || || || |||||||| || Sbjct 212 CGCGAAACGTCACCGAAAAGTTCTTCGCGATAATATTCAGGGCATAACTAAGCCAGCGAT 271 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | |||||||| || | ||||| ||||| ||| | ||||| | | || || |||| Sbjct 272 CAGACGTCTGGCACGAAGAGGTGGCGTCAAACGTATTTCTGGCCTCATTTACGAGGAGAC 331 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | || | || ||| ||| ||| ||| || || || || ||||| Sbjct 332 TCGCGGTGTACTCAAAGTGTTTCTCGAGAACGTGATCAGAGACGCAGTCACTTACACCGA 391 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||||||||||||||||| | |||||| | || || ||| | ||||||||||| Sbjct 392 ACACGCAAAACGTAAGACTGTCACTGCTATGGATGTGGTGTACGCACTCAAACGTCAAGG 451 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | |||| || ||||| ||||| Sbjct 452 AAGAACGCTTTACGGCTTTGGTGGTTAA 479 >seq83881 Length=11609 Score = 136 bits (150), Expect = 6e-28 Identities = 191/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || ||||| || | |||||| |||||||| || || || || || || || || Sbjct 408 CGCGAAACGTCACCGAAAGGTTCTTCGCGATAACATTCAGGGCATAACTAAACCCGCGAT 349 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | ||| |||| || | ||||| || || ||| | ||||| || |||||||||||| Sbjct 348 CAGACGTTTGGCACGAAGAGGTGGTGTGAAACGTATATCTGGTCTGATCTATGAAGAGAC 289 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | || | || ||| | | ||| ||| ||||| || ||||| || Sbjct 288 TCGCGGTGTCCTCAAAGTGTTTCTCGAAAACGTGATCAGAGATGCCGTCACTTATACGGA 229 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | |||||||| || |||||||| | |||||||| | ||||||||||| Sbjct 228 ACACGCGAAGAGAAAGACTGTGACAGCCATGGATGTGGTCTATGCTCTCAAACGTCAAGG 169 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | ||||||||||| ||||| Sbjct 168 AAGAACTTTGTATGGTTTTGGCGGTTAA 141 >seq58543 Length=375 Score = 80.6 bits (88), Expect = 4e-11 Identities = 95/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 16571 TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACT 16630 || ||| ||| ||| ||| || || || || ||||| ||||| |||||||||||| Sbjct 2 TTTCTCGAGAACGTGATCAGAGACGCAGTCACTTACACCGAACACGCAAAACGTAAGACT 61 Query 16631 GTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTT 16690 ||||| | |||||| | || || ||| | ||||||||||| | | | |||| || ||| Sbjct 62 GTCACTGCTATGGATGTGGTGTACGCACTCAAACGTCAAGGAAGAACGCTTTACGGCTTT 121 Query 16691 GGAAGTTAA 16699 || ||||| Sbjct 122 GGTGGTTAA 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78982356695685