Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06] 101,545 sequences; 113,565,242 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq97562 140 2e-28 seq81101 140 2e-28 seq43703 140 2e-28 seq90709 114 9e-21 seq100917 98.7 7e-16 seq40065 93.3 3e-14 seq94648 89.7 3e-13 >seq97562 Length=950 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 845 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 904 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 905 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 939 >seq81101 Length=5000 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 4901 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 4842 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 4841 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4807 >seq43703 Length=504 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 405 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 346 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 345 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 311 >seq90709 Length=1112 Score = 114 bits (126), Expect = 9e-21 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 19951 CTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTA 20010 |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| Sbjct 409 CTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGCAGTA 350 Query 20011 ATATTTAGCCTTA 20023 ||||||||| ||| Sbjct 349 ATATTTAGCTTTA 337 >seq100917 Length=15418 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||||| |||| ||||| |||||| || ||| || || || |||||||| Sbjct 7786 CCGCCTCTCAGGCGCAGCACCAGATGAAGTGTCGACTCTTTCTGTATGTTGTAATCGCTT 7727 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | |||| ||||| ||||| || || ||||| | || || ||||| | || Sbjct 7726 AGTGTTCTTCCGTCTTCTAACTGTTTGCCAGCGAATATCAACCGCTGCTGATCAGGAGGA 7667 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT-TCAAC 38269 | ||| || |||||| ||| || ||||||||||| || || || | || || || Sbjct 7666 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCGATGGTGTC-CGACGGCTCCAC 7608 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| | || || || ||||| || | || ||||||||||||||||| || Sbjct 7607 TTCGAGCGTGATTGTCTTACCAGTGAGTGTCTTCACGAATATCTGCATTTT 7557 >seq40065 Length=761 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||| ||| || | || | | |||||| | ||| || ||||| || Sbjct 564 ACCAAATGAAGTGTGGAGTCTCTCTGTACGGTATAATCACTGATAACTCGCTCGTCTTCC 505 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | |||||| |||||||||||||| | |||||| || || | || ||||| || || Sbjct 504 AGTTGTTTGCCGGCAAATATTAGCCTTTGTTGGTCAACAGGCAAACCCTCTTTATCGGTA 445 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| || || ||||| ||| ||| || ||||| ||||| ||||| Sbjct 444 ATCTTCGACTTAACCACTTGAACAGTGTCTGTCGGTTCCACGTCTAACGTAATTGTTTTG 385 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||| || ||||||||||| ||||| Sbjct 384 CCATTCAGTGTCTTCACGAATATATGCAT 356 >seq94648 Length=7301 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | ||| | || || ||||| || ||| || || | || ||||| Sbjct 5066 CCACCTCTGAGACGAAGAACTAAGTGAAGTGTCGACTCTTTCTGTACGTTATAATCGCTT 5125 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||||| |||||||| || | |||||| ||| ||||||| || | ||| || || || Sbjct 5126 AAAACTCGTTCGTCTTCCAGTTGTTTGCCGCCAAATATCAGTCTTTGCTGGTCAACAGGA 5185 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || ||||| || ||| ||| ||| || || ||| | ||| ||| || Sbjct 5186 ATGCTCTCTTTATCGGCAATCTTTGACTTTACCAGTTGAACACTGTCTGTCGGTTCCACG 5245 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| ||||||||||| || |||| || || || || |||||||| Sbjct 5246 TCTAACGTAATAGTTTTGCCATTCAATGTCTTAACAAAGATCTGCAT 5292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334532676148895