Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06] 101,545 sequences; 113,565,242 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq95288 145 6e-29 seq22997 104 2e-16 seq32350 89.7 4e-12 seq5419 89.7 4e-12 >seq95288 Length=1419 Score = 145 bits (160), Expect = 6e-29 Identities = 343/508 (68%), Gaps = 14/508 (3%) Strand=Plus/Plus Query 551844 GTTGAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAAAGCTCTTCGT 551903 ||| |||| || ||||| ||| | ||| ||||| || || | | ||| | ||| Sbjct 4 GTTCAAGAATTCAAACGCAAACATAAAAAAGATCTTTCATCAAATAAGAGAGCGTTGCGT 63 Query 551904 CGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACT 551963 ||| | ||||| | ||||| ||||| || ||| | |||||||| ||||| ||| Sbjct 64 CGTTTGAGAACCTCATGCGAGAGAGCGAAGCGAACACTTTCATCATCGACTCAGGCCAGC 123 Query 551964 ATTGAAGTAGATTCATTATTTGAGGGAATTGA-TTATAATACGCCTATTTCGAGGGCCAA 552022 || ||| | ||||||||||| || || ||||| || || | || || | || || Sbjct 124 ATCGAAATCGATTCATTATTCGAAGGCATTGACTTCTACTCAACC-ATCACTAGAGCGCG 182 Query 552023 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTT 552082 ||| || || | | ||||||| || || |||| | || || || || | | || Sbjct 183 ATTCGAGGAATTGAATGCTGATCTGTTCCGATCAACACTCGATCCCGTGGAGAAGGCGTT 242 Query 552083 AAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTAC 552142 | || |||| | || || | | || || || || ||| | || ||||| ||||| Sbjct 243 GCGCGACGCAAAACTAGACAAGGCTCAGGTTCACGACATCGTGTTAGTCGGTGGCTCTAC 302 Query 552143 AAGAATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAAT 552200 | || || || |||| || | | ||| | | ||||||||||| |||| || Sbjct 303 TCGTATACCAAAGATTCAAAAACTACTTCAAGATTTC--TTCAATGGTAAGGAATTGAAC 360 Query 552201 GAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTT 552260 |||| ||||||| || || |||||||| || || |||||| |||||||||| |||||| Sbjct 361 AAAAGCATTAATCCGGACGAAGCTGTTGCTTACGGCGCCGCAGTTCAAGCAGCCATTCTT 420 Query 552261 TCTG--GACAAACTGATGAAAAACTACAAAATAT--TGTACTTGTAGATGTTACTCCTCT 552316 || |||||| | | ||| || ||||| || | ||| ||| || || || ||||| Sbjct 421 AATGGCGACAAA-TCA-GAACAAGTACAAGATCTGCTGTTATTG--GACGTCACGCCTCT 476 Query 552317 ATCTCTTGGTTTAGAAACAGTTGGAGGT 552344 ||| || ||| | ||||| | ||| ||| Sbjct 477 ATCACTCGGTATCGAAACCGCTGGCGGT 504 >seq22997 Length=461 Score = 104 bits (114), Expect = 2e-16 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 683981 TGCGGCTTTACTTCTAAGGTAATACATACCTGTTTTGAGACCTAATTTATGAGCATATAA 684040 ||||| ||| ||| | ||||||||||| || || | ||||| || | |||| || Sbjct 413 TGCGGGTTTTGTTCGTAAATAATACATACCAGTCTTTAATCCTAACTTCCAACCATAAAA 354 Query 684041 CAGACATGAATTTAATTTGGCAAAACTTGGACTTTCGATAAAT--ATATTCATACTCTGT 684098 | |||| ||| ||| |||| |||| || | |||| | ||||| | | ||| Sbjct 353 ATGCATTGAAGTTATTTTATCAAACGTTGG-CTCT-GATATGTGAATATTTAAAGACTGA 296 Query 684099 GTTTGATCAATAAATGGTGCACGTTCAGCAGCCATTTCTATGATAGATTTTTGAGGTATT 684158 | ||||||||||||||| ||||||| ||||||||||| || || ||||||||| ||| Sbjct 295 CTCTGATCAATAAATGGTCCACGTTCTGCAGCCATTTCAATAATTTTTTTTTGAGGCATT 236 Query 684159 TCCCAAACAGTGCGATAAATATCTTTAATATGCTGGGGAATAGTTGGTATTTT 684211 ||||| || || ||| | || ||| | | || |||||| ||| ||||| Sbjct 235 TCCCATACTGTTTTATACAGATTTTTTAAGTCTTGAGGAATATTTGAAATTTT 183 >seq32350 Length=461 Score = 89.7 bits (98), Expect = 4e-12 Identities = 187/277 (68%), Gaps = 3/277 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGT-TTG--GCAAAATGGT 550048 || || || || ||||| ||| | ||| || | || ||| || ||| ||| | || Sbjct 62 GCAATCGGAATTGATTTGGGATCAACAAATTCATATGGTGGAGTATTGCANCAACACGGA 121 Query 550049 AAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTC 550108 ||||| || || || ||||| ||||| || || || ||||||||||| ||||| | || Sbjct 122 AAAGTCGAGATAATCGCCAACGATCAGGGAAATAGGACTACTCCATCATATGTGGCGTTT 181 Query 550109 ACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACC 550168 || || | || | | | || || |||| ||| |||||| | ||| | Sbjct 182 ACTGACAAAGAGCTCCTTATAGGAGACTCAGCTAAACATCAAGTTGCGAAGAATTCATTA 241 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 ||||| || || || || || | |||||||| |||||||| |||| | ||||| Sbjct 242 AATACAATATTCGACGCAAAGAGATTAATTGGTAGAAGTTTCGATGACAAGGAAGTTCAT 301 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATG 550265 ||||||||| | |||||| ||| || | |||||| Sbjct 302 AAAGATATGAAACTTTGGCCATTCAAAGTGATTAATG 338 >seq5419 Length=656 Score = 89.7 bits (98), Expect = 4e-12 Identities = 279/428 (65%), Gaps = 13/428 (3%) Strand=Plus/Minus Query 685243 AAAACAAATCTCTGGCTCTTTCAGTTTCCGCTCCTGTAttttttttAAGATCGAGGAAAA 685302 |||| |||||||| || | | ||| | || |||||||||| | || || || Sbjct 650 AAAATAAATCTCTAGCACGTAGCTCTTCAGGACCATTATTTTTTTTTAATTCTAGAAATT 591 Query 685303 AATAAATATCTGCATGCCAAGGTTCAATATAAATAGCAAATGAACCAGCTC---TTTTGC 685359 | |||||||||||||| | ||||| | |||| || | || |||| || |||| | Sbjct 590 CCAATATATCTGCATGCCATGTTTCAACAAAAATTGCCATTGCTCCAGGTCTTTTTTTTC 531 Query 685360 CTCCTTGATTGGCATACCTCGATATATTATTAAATACAGTTAATACTCGTAGA---CCAC 685416 |||| |||| || || | |||| || || ||| ||| | | | | | ||| Sbjct 530 CTCCATGATCAATGTATCTTGCAGTATTGTTGAAAACACGTAACATTGGAACAATTCCAT 471 Query 685417 TTGCTGTGCCTTGTGTAGAATTAATATAAGATCCATCCGCC--CTAATATTTGAAACATT 685474 ||| ||| | | ||| ||||||||| |||| || | || || || | ||| Sbjct 470 TTGATGTACAATTTGTTCCTTTAATATAACTTCCA--CGACTTCTTATGTTATTTATATT 413 Query 685475 TACACCAATTCCACCAGCATATTTACTAATCATAGCACAATCTTTCCAACAATCACCAAT 685534 | || |||||||| | ||| || ||| || ||||||| ||| || | | ||| Sbjct 412 CAACCCTATTCCACCTGAATACTTTGAAATAATTGCACAATTATTCAAAGTTTTATAAAT 353 Query 685535 TGCTCCCATATCATCTTTT---ATTCCTAAAAGGAAACAGCTTGATAATTGTTCATGAGT 685591 | || | ||| ||||| | ||| ||| | |||| ||||| | |||| | | | Sbjct 352 TCCTTCAATACTATCTTCTGCCATTGATAATAAATAACAACTTGAAAGTTGTGGACGTGG 293 Query 685592 AGTTCCAGCATTAAATAATGTTGGTGTTGCATGAGTAAAATAACCCTGTGACAACATTTC 685651 |||||| | || ||||| ||||| ||||| ||| |||| | | | ||||| ||| | Sbjct 292 AGTTCCGGAATGCAATAACGTTGGAGTTGCGTGAATAAACAAGCGTTTTGACATCATATT 233 Query 685652 ATAAGTTT 685659 ||| |||| Sbjct 232 ATAGGTTT 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4023925842432050