Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06] 101,545 sequences; 113,565,242 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq32350 127 1e-23 seq97326 123 2e-22 seq2686 107 1e-17 seq67252 100 2e-15 seq95288 87.8 1e-11 seq34509 86.0 4e-11 >seq32350 Length=461 Score = 127 bits (140), Expect = 1e-23 Identities = 241/350 (69%), Gaps = 10/350 (3%) Strand=Plus/Plus Query 474377 CAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATAT 474436 ||| | || ||||| || ||||| ||||| || || || ||||| || || ||||||||| Sbjct 113 CAACACGGAAAAGTCGAGATAATCGCCAACGATCAGGGAAATAGGACTACTCCATCATAT 172 Query 474437 GTTTCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT 474496 || | |||||||| | || | ||||| ||||| | |||||| |||||| ||| Sbjct 173 GTGGCGTTTACTGACAAAGAGCTCCTTATAGGAGACTCAGCTAAACATCAAGTTGCGAAG 232 Query 474497 AATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACC 474556 ||| | | ||||| || || || || || ||||| |||||| | | ||| ||||| | Sbjct 233 AATTCATTAAATACAATATTCGACGCAAAGAGATTAATTGGTAGAAGTTTCGATGACAAG 292 Query 474557 ACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCA 474616 || || |||||| | |||||| || || ||||| |||| | || || ||| Sbjct 293 GAAGTTCATAAAGATATGAAACTTTGGCCATTCAAAGTGATTAATGAAGAAGGAAAGCCA 352 Query 474617 TATATAGAAGCAATACA----CGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTC 474672 | | || |||| | ||| ||| | | |||| || || || ||| | ||||| Sbjct 353 AAATTCGA---AATAGAGTATCGC-GGTAAGATTAAAACCTTCTCTCCCGAAGAGATTTC 408 Query 474673 TTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGA 474721 | ||||||||| | |||||||| ||| || ||| ||||||| ||| Sbjct 409 ATAAATGGTTTTTACAAAAATGAAGGAAATTGCTGAG-GCATATCTCGGA 457 >seq97326 Length=4768 Score = 123 bits (136), Expect = 2e-22 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 474657 CACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATAT 474715 |||| ||| | || | |||||||||| | ||||||||| | || || ||| ||||| Sbjct 2548 CACCCGAAGAGATAAGTGCAATGGTTTTGACAAAAATGAAAGAGACTGCTGAGG-CATAT 2490 Query 474716 CTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAA 474775 | || || |||| || | || || | || ||||| |||||||| || || |||| Sbjct 2489 TTAGGTAAAAAAGTGACACACGCTGTGGTGACAGTTCCCGCATATTTCAACGACGCTCAG 2430 Query 474776 CGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAAT 474835 ||||| ||||||||||| || ||| || || || ||| ||| | || |||||||| Sbjct 2429 CGTCAGGCAACTAAAGACGCCGGAGTTATCGCCGGACTTGTTGTGATGCGAATTATTAAC 2370 Query 474836 GAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGA 474875 ||||||||||| || || | ||||||||||| || |||| Sbjct 2369 GAACCAACAGCTGCTGCCATCGCTTATGGTCTCGACAAGA 2330 >seq2686 Length=485 Score = 107 bits (118), Expect = 1e-17 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || |||||| | | ||| ||||| |||||| | ||||| |||||||||| |||| | Sbjct 5 ACAGTTCCATCTTGTTTCAATGACTCTCAAAGGCAAGCGACTAAAGATGATGGAACTTTA 64 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 | ||||| ||| | || | ||||| || ||||| ||||| || || ||||||||||| Sbjct 65 TCTGGTCTAAATATATTGCTAATTATCAACGAACCGACAGCTGCTGCCATTGCTTATGGT 124 Query 474866 CTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919 | |||||||| | | | ||| |||||| |||||||||||| || ||| Sbjct 125 TTAGATAAGAAATATCAGGTAGACACAAATGTAGTAATCTTTGATTTAGGTGGT 178 >seq67252 Length=1665 Score = 100 bits (110), Expect = 2e-15 Identities = 267/399 (67%), Gaps = 27/399 (7%) Strand=Plus/Minus Query 594408 CTGAGTGAAAATGACAGAATATTTATTATGCATGTACTTGCATTTTTTGCATCAGCAGAT 594467 || ||||||||||| ||| ||| || || | || || ||||||||| || || Sbjct 1240 CTAAGTGAAAATGAAAGACACTTTTTTTCTTATATTCTCGCTTTTTTTGCAACAAGTGAC 1181 Query 594468 GGTATTGTAAATGCAAATATAAAAGAAA-ATTTAATTGATGTTGTTAAAATTAAAGAAGC 594526 || || || || | |||| | ||||| |||| || || |||| |||||| ||||| Sbjct 1180 GGAATAGTCAACGAAAATTTGGCAGAAAGATTTTTATG-TGATGTTCAAATTAGTGAAGC 1122 Query 594527 AGAATGTGCATATGGTAAACAATTTGAAATGGAAAATGCACATGGAGAAATGTA---TTC 594583 | ||| |||||| ||| ||| | | |||||| ||| ||||||||| || Sbjct 1121 AAGATGCTTCTATGGTTTGCAAATTGCAGTTGAAAATATACACTCAGAAATGTACAGTTT 1062 Query 594584 ATTGATGTTAGATACATTTGTAAAAGAT---GATATACTTAA-GGATAAATTAATTAAAG 594639 ||| ||| ||||| | | |||||| |||| || || | ||| |||| || Sbjct 1061 ATTATTGT---ATACACTCATTAAAGATAAAGATAAACAAAATACCTTAATAAATTCAAT 1005 Query 594640 CCATAAAAACTATGCCAAGTATTaaaaaaaaaGCAGATTGGTGTAAAAAATGGATTAAAT 594699 |||||| ||| | |||||||||||||| || ||| ||||||||| || Sbjct 1004 CCATAA----TATTAGTTGCATTAAAAAAAAAGCCGAATGGGCATTAAAATGGATAAA-- 951 Query 594700 CTGATAAAAC---TTA----TGCACATAAATTAGTTGCATTTGCTATTGTTGAAGGTGTA 594752 ||| ||||| ||| || | | | | | || ||||||||| ||||||||| | Sbjct 950 -TGA-AAAACATGTTAGCTTTGGAGAGAGACTCGTGGCATTTGCTGCTGTTGAAGGAATT 893 Query 594753 TTTTTTAGTGGATCATTCGCGTCGATATTCTGGTTAAAA 594791 ||||||||||| ||||| || | || | ||| ||||| Sbjct 892 TTTTTTAGTGGTTCATTTGCTGCTATTTATTGGATAAAA 854 >seq95288 Length=1419 Score = 87.8 bits (96), Expect = 1e-11 Identities = 272/416 (65%), Gaps = 4/416 (1%) Strand=Plus/Plus Query 475427 GTTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTTCAACATCTGCTAAAGCATTAAGA 475486 ||| |||| ||||| | ||| ||||| ||||||||| || | | ||| || | Sbjct 4 GTTCAAGAATTCAAACGCAAACATAAAAAAGATCTTTCATCAAATAAGAGAGCGTTGCGT 63 Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||| | ||||| | || || | || |||||| | ||||| || | ||||| | | Sbjct 64 CGTTTGAGAACCTCATGCGAGAGAGCGAAGCGAACACTTTCATCATCGACTCAGGCCAGC 123 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACAAGGGCTAA 475605 | ||| | ||||| | || ||||| ||||| || || | | || || || || Sbjct 124 ATCGAAATCGATTCATTATTCGAAGGCATTGACTTCTACTCAACC-ATCACTAGAGCGCG 182 Query 475606 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT 475665 ||| || || | | ||||||| || || |||| | || ||||| || | | | Sbjct 183 ATTCGAGGAATTGAATGCTGATCTGTTCCGATCAACACTCGATCCCGTGGAGAAGGCGTT 242 Query 475666 CAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725 | || | ||||| ||||| | || || || || || || | || || || || || Sbjct 243 GCGCGACGCAAAACTAGACAAGGCTCAGGTTCACGACATCGTGTTAGTCGGTGGCTCTAC 302 Query 475726 AAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTT-AATGGTAAAAAGTTAAATG 475784 | || ||||| || | || | ||| || || | || |||||||| | || || Sbjct 303 TCGTATACCAAAGATTCAAAAACTACTT-CAAGATTTCTTCAATGGTAAGGAATTGAACA 361 Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATT 475840 |||| | ||||| || ||||||||||| || || || || || |||||||| ||| Sbjct 362 AAAGCATTAATCCGGACGAAGCTGTTGCTTACGGCGCCGCAGTTCAAGCAGCCATT 417 >seq34509 Length=4334 Score = 86.0 bits (94), Expect = 4e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 817112 CCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATAATTGGTGAATCT 817171 |||||||| || || || |||||| | ||||| | || ||||| || |||||||| | Sbjct 1764 CCAAATATAGCGAAAGAGATGCATGTCGGACATCTTAGGTCTACTATTATTGGTGATGGT 1705 Query 817172 CTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATAAATCATATTGGTGAT 817231 | | ||||| | |||||| || | || || | | | | |||||||| || || Sbjct 1704 GTGTCCAGAATTTTGGAATTTCTAGGTTACGATGTTCTACGTGTGAATCATATCGGAGAC 1645 Query 817232 TGGGGAACACAATTTGGTATGTTAATTGCA 817261 |||||||| ||||||||||||||| | ||| Sbjct 1644 TGGGGAACGCAATTTGGTATGTTATTGGCA 1615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3263823442253660