Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06] 101,545 sequences; 113,565,242 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq72717 129 3e-25 seq5419 111 8e-20 >seq72717 Length=3270 Score = 129 bits (142), Expect = 3e-25 Identities = 394/595 (66%), Gaps = 17/595 (3%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||||||||||||||||||||| | |||||||| | |||||||||||| | ||| ||| Sbjct 763 CATAAATAAATCTGGAATCCATAAGGCATAAAAAAGATCTCTCGCTCTTAGTTCCTCTGC 822 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAA-TCAAAAATATCTGAGTGCCATGGTTCTAAAT 26051 || ||| ||||| | || |||||| || || || |||| ||||||| ||||| || Sbjct 823 ACCAAAATTTTTTTTCAACTC-AAGAAACTCGAATATTTCTGCATGCCATGTTTCTACAT 881 Query 26052 AGATAGCAAAACTACCT--TTTCTTTTTCCTCCACCTTGATCT-ACGTATCTTGCAGTTT 26108 | || | ||| ||| || || || |||| |||||| | | ||| || || | Sbjct 882 AAATTGTAAACGCGCCTGGCTTATTGTT--TCCA-CTTGATTTGAAAAATCGCGCTGTGT 938 Query 26109 CATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCT 26168 |||| |||| | | |||||| |||| ||| |||| | | | || | | ||| | Sbjct 939 TATTGTAAACCCTGATCATTGGCACTATTCCGTTTGATACACTACTAGTACAAGCAATAT 998 Query 26169 TGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAA 26228 | | || | | | || | ||| || | || |||||||||| ||| | | Sbjct 999 TTGTACCATTACAACGAACTTTGTGTATATTGAGCCCAATTCCACCAGAATGTTTCGCTA 1058 Query 26229 TAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTA 26288 | |||||| | | | || | |||||||||| | ||||| | | |||| || Sbjct 1059 TTTTTGCACATTTATATAAAGTCTTAAAAATTCCTTCAACACTATCTTCATGCATTGTTA 1118 Query 26289 ATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAG 26348 ||| ||||||| || | ||| | | | ||||||||| || | ||| || |||| || Sbjct 1119 ATAGAAAACAACTTGACATTTGTGGACAAATTGTTCCTGCGTTCATTAACGTTGGTGAAG 1178 Query 26349 CATGAGTATA--ATATCCTTCACTCAAAGCTGTATAAGTTT-CAAGAACTTCATCGATAT 26405 |||| || | | | || || | || || || |||| |||| ||| |||| |||| Sbjct 1179 AATGAATAAACCAGTTTTTTGACATATAGTTG--TACGTTTGCAAG-ACTGCATCAATAT 1235 Query 26406 TGTAATTACTAACTTCAATAGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACAT 26465 | | | || | | | || ||| | |||| | || || ||||||||||| | Sbjct 1236 CATCAGAATGAATTCCTAAAGAAACTCTCATATACATGTGCTGTGGACGTTCAATTACTT 1295 Query 26466 TATTTTCCGCATCTCTAATCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATA 26520 | ||||| || | |||| ||||||||||| || | ||| | || |||||||| Sbjct 1296 TGTTTTC--AATTTTTAAT-AAATAAGATTTCTCAAGTGTTCTGAAACCAAAATA 1347 >seq5419 Length=656 Score = 111 bits (122), Expect = 8e-20 Identities = 267/400 (67%), Gaps = 8/400 (2%) Strand=Plus/Minus Query 25961 TAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAA 26020 |||||||||||||| || | | ||||| || | ||| ||||||| |||| || Sbjct 651 TAAAATAAATCTCTAGCACGTAGCTCTTCAGGACCATTATTTTTTTTTAATTCTAGAAAT 592 Query 26021 TCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCT 26080 || || ||||||| ||||||| ||| | | | || || | || ||||||| | Sbjct 591 TCCAATATATCTGCATGCCATGTTTCAACAAAAATTGCCATTGCTCCAGGTCTTTTTTTT 532 Query 26081 CCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCA 26140 || || ||||| | |||||||||||| | |||||||| ||||||||||| | |||| Sbjct 531 CCTCCATGATCAATGTATCTTGCAGTATTGTTGAAAACACGTAACATTGGAACAATTCCA 472 Query 26141 GTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGA--TCTAATATCGTGAGCAT 26198 |||| | ||||| | | ||| | ||| ||| ||| || | | || Sbjct 471 TTTGATGTACAATTTGTTCCTTTAATATAACTTCC--ACGACTTCTTATGTTATTTATAT 414 Query 26199 GAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAAT--CTGAAACTGTATCGAA 26256 | || |||||||| | | ||||||||| |||||||| | ||| || | | Sbjct 413 TCAACCCTATTCCACCTGAATACTTTGAAATAATTGCACAATTATTCAAA--GTTTTATA 356 Query 26257 AATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATG 26316 |||||||| || ||||| || |||| ||||||| ||||| || | ||| | | | Sbjct 355 AATTCCTTCAATACTATCTTCTGCCATTGATAATAAATAACAACTTGAAAGTTGTGGACG 296 Query 26317 AGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTA 26356 | ||||| |||| ||||| || || || || ||| || Sbjct 295 TGGAGTTCCGGAATGCAATAACGTTGGAGTTGCGTGAATA 256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252726842835875