Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06] 101,545 sequences; 113,565,242 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq96803 176 9e-39 seq100917 91.5 3e-13 >seq96803 Length=7468 Score = 176 bits (194), Expect = 9e-39 Identities = 545/838 (65%), Gaps = 21/838 (3%) Strand=Plus/Minus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 |||| ||||| ||| | |||||||||||| || |||| | | | ||||||||| Sbjct 4099 CTTCCAATGAAATTTGCTCCATAAAATCAAAAGGGTTTTCCGACTGA-AATATTTTTGGA 4041 Query 49633 CTATC-AATACATATAATAA-TCTATCGGCTACAAATTCAACATATTGTGACATTAATTC 49690 | ||| ||| | || | || | |||| || || |||||| || ||| ||| | | Sbjct 4040 CAATCTAATTCC-ATGAGAAGTTTATCAGCAACGTATTCAATGTACTGTTTCATGAGTGA 3982 Query 49691 ACAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttc 49750 |||||||| || | ||| || ||| | ||||| | | |||||||| ||| ||| Sbjct 3981 GCAATTCATGCCAATTAAACGAACTGGCAGAGCATCCACTAGAAATTCTTGTTCAATTAA 3922 Query 49751 tacagcttgtttaattatcataattatattattttttgataatttatatttaatatgat- 49809 || |||| | ||| || | ||| |||| | ||| | ||| | || Sbjct 3921 AACGGCTTCTCGAATAATTTCGACTATTTTATCCTCGCTCGGTTTGTTGCGAATGT-ATC 3863 Query 49810 -tcgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCA 49868 ||| | ||| || ||||||||||||| |||||| || || || | ||| || | |||| Sbjct 3862 GTCGAA-ATACTAGACATGCAAAATCACAATGTAATCCTTCATCACGAGAAATTAGTTCA 3804 Query 49869 TTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAA 49928 || |||||||| || || | | || ||| | | ||||| ||||||||| |||||||| Sbjct 3803 TTGCTAAAAGTCAAACCACGTAATATTCCGCGTTGTTTAATCCAAAATATAGATGCAAAC 3744 Query 49929 CTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACAT- 49987 || | ||| ||||| || || ||| || ||||| | || | | | |||| Sbjct 3743 GAACCACTAAAAAATATCCCTTCAACAGCAGCGAATGCAACTAAACGTTCAGCAAAAGAA 3684 Query 49988 --TAATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGT 50045 ||| |||| | | ||||| || ||||| | ||| ||||| |||| | | ||| Sbjct 3683 GCTAAATTATTAG---AAATCCAGCGTAATGCCCATTGTGCCTTTTTCTTGACACATGGT 3627 Query 50046 ATATTTTCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNN 50105 || |||| || || |||||||| || |||| | Sbjct 3626 ATCGTTTCAATTGCATTAAATAAAAGCATTCTTTCTTTTTTGTCATCAATATACGTTTGC 3567 Query 50106 ATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAAT 50165 | | ||| ||||||||||| ||||| ||| || || || ||||||||| |||||| Sbjct 3566 AAAAGTAATGAATACATTTCTGAATGCACATTCTCAATCGCAATTTGAAATCCATAAAAG 3507 Query 50166 TGTCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACA 50225 | |||||||| | |||||| || | ||||||||| | | ||| ||| ||| Sbjct 3506 CAACGTGCTTCTGTAACCTGAACCTCTCGTATAAATCGTTCAGCAAGATTTTCATTAACA 3447 Query 50226 ATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATA--AAATGTTTTTCATTAT 50283 | |||||| || || || ||||| | || ||| ||| ||| || ||||| Sbjct 3446 ACTCCATCACTAGCGGCAAAAAATGCAAGAA--TATACGATAAGAAACGTCGTTCATCCG 3389 Query 50284 CTTTTAA---ATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCC 50340 ||||| ||| |||| || |||| | |||||| ||||| |||| ||||| Sbjct 3388 GGTTTAATTTATTGATCCAATCAGCACGATCACGTCCTAAATCAACTTCCTCTACTGTCC 3329 Query 50341 AAAATGATGCTACGGATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAA 50398 ||||||| ||| | |||||| |||||||| ||| ||| ||| ||| | ||||| Sbjct 3328 AAAATGAAGCTTGAGCTTTTTTGTACATTTGCCATAAATCGTAATATTCTACTGGAAA 3271 >seq100917 Length=15418 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| || || | || | ||| | || | |||||| || || ||||| | Sbjct 7786 CCGCCTCTCAGGCGCAGCACCAGATGAAGTGTCGACTCTTTCTGTATGTTGTAATCGCTT 7727 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| | | || || || ||||| ||||| || || || | ||| |||||||| || Sbjct 7726 AGTGTTCTTCCGTCTTCTAACTGTTTGCCAGCGAATATCAACCGCTGCTGATCAGGAGGA 7667 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || || || || || || || || ||||| || | || |||| || ||| Sbjct 7666 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCGATGGTGTCCGACGGCTCCACT 7607 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || || |||||||| | ||| || | |||||||||||||| Sbjct 7606 TCGAGCGTGATTGTCTTACCAGTGAGTGTCTTCACGAATATCTGCATTTT 7557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983199146910750