Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06] 101,545 sequences; 113,565,242 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq68182 107 6e-18 seq67252 96.9 1e-14 >seq68182 Length=3400 Score = 107 bits (118), Expect = 6e-18 Identities = 224/330 (68%), Gaps = 4/330 (1%) Strand=Plus/Plus Query 289016 CGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTT 289075 ||| ||| ||| | || || ||||| |||||||| || || | | |||||| | || | Sbjct 1476 CGCCCCTCTTTCTGCCGACCGCATCGATTTCGTCGATAAATAGAATACACGGCGCGTTCT 1535 Query 289076 GTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTA 289135 || || | || || | ||||| || | || | || | || ||| ||||||| | Sbjct 1536 TTCGTGCGGTGGCGAACATGTCTCTCACTCTCGACGGACCGACGCCGACAAACATTTCGA 1595 Query 289136 CAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCG 289195 ||| || || | || ||| ||||| | || |||||||| || || || ||| Sbjct 1596 GAAACTCGGAGCCCGACACTGTGATGAACGGAACGTTTGCTTCACCAGCAGTGGCTTTCG 1655 Query 289196 CCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTG 289255 |||||||||| || || ||||| || || ||| || ||| |||| ||||| | ||||| Sbjct 1656 CCAGAAGTGTTTTGCCAGTTCCTGGCGGACCCGTTAGTAGCGCTCCTTTTGGGATTTTTG 1715 Query 289256 C-CCCAGCAGACT-TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTC 289313 | |||| | || ||||| | |||| | |||||||| | || | |||| | || Sbjct 1716 CTCCCA--AATCTAAATATTGTTGAGGGTTTTTTAAAAAATTCACGAATTCCATTATCTC 1773 Query 289314 ATATTTTGCCTCATCACATCCTGCTACATC 289343 ||||| || |||||||| || ||||| Sbjct 1774 CAGCTTTGCTTCTTCACATCCGGCAACATC 1803 >seq67252 Length=1665 Score = 96.9 bits (106), Expect = 1e-14 Identities = 304/461 (66%), Gaps = 14/461 (3%) Strand=Plus/Minus Query 133203 ATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTC 133262 |||||| ||| ||| ||||| ||| | || |||||||| | ||||| || || || Sbjct 1230 ATGAAAGACACTTTTTTTCTTATATTCTCGCTTTTTTTGCAACAAGTGACGGAATAGTCA 1171 Query 133263 TTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTT 133322 |||||||| | | | | ||| | | || |||||| | ||||| | ||| | Sbjct 1170 ACGAAAATTTGGCAGAAAGATTTTTATGTGATGTTCAAATTAGTGAAGCAAGATGCTTCT 1111 Query 133323 ATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTA--ATTG- 133379 |||| | || ||||| | |||||||| || || | || | | | | || |||| Sbjct 1110 ATGGTTTGCAAATTGCAGTTGAAAATATACACTCAG--AAATGTAC-AGTTTATTATTGT 1054 Query 133380 ATACTTACATCAAAGATACCGTCCAGAAGCACAA-AC--TATTCAACGCCATTAGCGAAT 133436 |||| ||| ||||||| | | || || || || || | || | || | Sbjct 1053 ATACACTCATTAAAGATAAAG---ATAAACAAAATACCTTAATAAATTCAATCCATAATA 997 Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 || ||| |||||||| ||| | || ||||| | |||||||| | || || | || | Sbjct 996 TTAGTTGCATTAAAAAAAAAGCCGAATGGGCATTAAAATGGATAAATGAAAAACATGTTA 937 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 | |||| | ||||| || ||||||| || || || |||||||| |||||| | | Sbjct 936 GCTTTGGAGAGAGACTCGTGGCATTTGCTGCTGTTGAAGGAATTTTTTTTAGTGGTTCAT 877 Query 133557 TCTGCT-CTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAAC 133615 | |||| |||||| |||| | ||| | ||||| ||| || ||| | |||| Sbjct 876 T-TGCTGCTATTTATTGGATAAAAGAACGTGGAATTTTAAATGGTTTAACGCAAAGTAAC 818 Query 133616 GAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 |||||||||||||| || || | |||||| || ||||| Sbjct 817 GAACTTATTTCAAGAGATGAAGGCCTTCACTGTGATTTTGC 777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469902698610665