Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06]
101,545 sequences; 113,565,242 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq100917 116 3e-21
seq95989 104 2e-17
seq94648 104 2e-17
seq31699 84.2 2e-11
>seq100917
Length=15418
Score = 116 bits (128), Expect = 3e-21
Identities = 166/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || |||| |||||||||| |||||| || || ||||| || ||||| |||||
Sbjct 7786 CCGCCTCTCAGGCGCAGCACCAGATGAAGTGTCGACTCTTTCTGTATGTTGTAATCGCTT 7727
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || | || || | ||||||||||| ||||||| | |||||||| || |||
Sbjct 7726 AGTGTTCTTCCGTCTTCTAACTGTTTGCCAGCGAATATCAACCGCTGCTGATCAGGAGGA 7667
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| ||||| ||||| || ||| || | || ||| | || | ||||| || | || ||
Sbjct 7666 ATGCCCTCCTTGTCCTG-AATCTTCGCCTTCACATTCTCGATGGTGTCCGACGGCTCCAC 7608
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
||| || || || || || ||||| | || || || ||||||||||||||
Sbjct 7607 TTCGAGCGTGATTGTCTTACCAGTGAGTGTCTTCACGAATATCTGCATTTT 7557
>seq95989
Length=12046
Score = 104 bits (114), Expect = 2e-17
Identities = 95/120 (79%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
|||||| || | ||| || ||||||||||| || ||||||||||| |||||||||||
Sbjct 11927 TCCTCCTCTGAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATGTTATAATCACT 11986
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| ||||| ||| || ||||||||||| || ||||||||| ||||||||| || ||
Sbjct 11987 TAAAGTGCGTCCATCCTCTAGTTGTTTGCCTGCGAATATCAATCGTTGCTGATCGGGAGG 12046
>seq94648
Length=7301
Score = 104 bits (114), Expect = 2e-17
Identities = 167/234 (71%), Gaps = 12/234 (5%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618
|| || || | ||| || || || ||||| || || ||||| || | ||||||||| |
Sbjct 5066 CCACCTCTGAGACGAAGAACTAAGTGAAGTGTCGACTCTTTCTGTACGTTATAATCGCTT 5125
Query 29619 AA---TGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675
|| | || || || || ||||||||||| || |||||| ||||||||| ||
Sbjct 5126 AAAACTCGTTCG----TCTTCCAGTTGTTTGCCGCCAAATATCAGTCTTTGCTGGTCAAC 5181
Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTG--TTTGACAGTTTCTACAGTGTCAGAAAGT 29733
||||| | |||||| || | ||| |||| ||| ||||| ||| |||| | ||
Sbjct 5182 AGGAATGCTCTCTTTATCG-GCAATCTTTGACTTTACCAGTTGA-ACACTGTCTGTCGGT 5239
Query 29734 TCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| || || | || |||||||||||| | || || |||||||| |||||||||
Sbjct 5240 TCCACGTCTAACGTAATAGTTTTGCCATTCAATGTCTTAACAAAGATCTGCATT 5293
>seq31699
Length=2351
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 88948 CGGTTTGCATGGTTTTCATGTGCACGAATATGGCGACACGAGTAACGGATGCACGTCGGC 89007
|||| |||||| |||||||||||||||| || |||| | ||| || ||||| || ||
Sbjct 454 CGGTCAGCATGGCTTTCATGTGCACGAATTCGGTGACAACACTAATGGCTGCACATCTGC 513
Query 89008 GGGCGAACATTTCAATCCCACGGGCATGGATCACGGCGCGCCCGACGCTTTAATGAAACA 89067
|| || |||||||||| || || |||||||| || || | | || | |||
Sbjct 514 CGGTCCGCACTTCAATCCCAACAACAAAGAACACGGCGCTCCGGAGGATCAAAATAGACA 573
Query 89068 TGTTGGTGATTTGGGAAATGT 89088
||| || |||||||| |||||
Sbjct 574 TGTCGGCGATTTGGGTAATGT 594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 384742460542845
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |