Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06] 101,545 sequences; 113,565,242 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq100917 116 3e-21 seq95989 104 2e-17 seq94648 104 2e-17 seq31699 84.2 2e-11 >seq100917 Length=15418 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| |||||||||| |||||| || || ||||| || ||||| ||||| Sbjct 7786 CCGCCTCTCAGGCGCAGCACCAGATGAAGTGTCGACTCTTTCTGTATGTTGTAATCGCTT 7727 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | || || | ||||||||||| ||||||| | |||||||| || ||| Sbjct 7726 AGTGTTCTTCCGTCTTCTAACTGTTTGCCAGCGAATATCAACCGCTGCTGATCAGGAGGA 7667 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| ||||| || ||| || | || ||| | || | ||||| || | || || Sbjct 7666 ATGCCCTCCTTGTCCTG-AATCTTCGCCTTCACATTCTCGATGGTGTCCGACGGCTCCAC 7608 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||| || || || || || ||||| | || || || |||||||||||||| Sbjct 7607 TTCGAGCGTGATTGTCTTACCAGTGAGTGTCTTCACGAATATCTGCATTTT 7557 >seq95989 Length=12046 Score = 104 bits (114), Expect = 2e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | ||| || ||||||||||| || ||||||||||| ||||||||||| Sbjct 11927 TCCTCCTCTGAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATGTTATAATCACT 11986 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||||| ||| || ||||||||||| || ||||||||| ||||||||| || || Sbjct 11987 TAAAGTGCGTCCATCCTCTAGTTGTTTGCCTGCGAATATCAATCGTTGCTGATCGGGAGG 12046 >seq94648 Length=7301 Score = 104 bits (114), Expect = 2e-17 Identities = 167/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 || || || | ||| || || || ||||| || || ||||| || | ||||||||| | Sbjct 5066 CCACCTCTGAGACGAAGAACTAAGTGAAGTGTCGACTCTTTCTGTACGTTATAATCGCTT 5125 Query 29619 AA---TGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675 || | || || || || ||||||||||| || |||||| ||||||||| || Sbjct 5126 AAAACTCGTTCG----TCTTCCAGTTGTTTGCCGCCAAATATCAGTCTTTGCTGGTCAAC 5181 Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTG--TTTGACAGTTTCTACAGTGTCAGAAAGT 29733 ||||| | |||||| || | ||| |||| ||| ||||| ||| |||| | || Sbjct 5182 AGGAATGCTCTCTTTATCG-GCAATCTTTGACTTTACCAGTTGA-ACACTGTCTGTCGGT 5239 Query 29734 TCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || | || |||||||||||| | || || |||||||| ||||||||| Sbjct 5240 TCCACGTCTAACGTAATAGTTTTGCCATTCAATGTCTTAACAAAGATCTGCATT 5293 >seq31699 Length=2351 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 88948 CGGTTTGCATGGTTTTCATGTGCACGAATATGGCGACACGAGTAACGGATGCACGTCGGC 89007 |||| |||||| |||||||||||||||| || |||| | ||| || ||||| || || Sbjct 454 CGGTCAGCATGGCTTTCATGTGCACGAATTCGGTGACAACACTAATGGCTGCACATCTGC 513 Query 89008 GGGCGAACATTTCAATCCCACGGGCATGGATCACGGCGCGCCCGACGCTTTAATGAAACA 89067 || || |||||||||| || || |||||||| || || | | || | ||| Sbjct 514 CGGTCCGCACTTCAATCCCAACAACAAAGAACACGGCGCTCCGGAGGATCAAAATAGACA 573 Query 89068 TGTTGGTGATTTGGGAAATGT 89088 ||| || |||||||| ||||| Sbjct 574 TGTCGGCGATTTGGGTAATGT 594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384742460542845