Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06] 101,545 sequences; 113,565,242 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq95288 161 7e-34 seq32350 145 6e-29 seq95264 127 2e-23 seq2686 107 1e-17 seq93545 102 6e-16 seq11063 102 6e-16 seq34509 100 2e-15 >seq95288 Length=1419 Score = 161 bits (178), Expect = 7e-34 Identities = 344/505 (68%), Gaps = 8/505 (2%) Strand=Plus/Minus Query 281671 ACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 281730 ||| ||||| ||||| | ||| || || ||||| ||||| || | || | | || ||| Sbjct 504 ACCGCCAGCGGTTTCGATACCGAGTGATAGAGGCGTGACGTCCAATAACAGCAGATCTTG 445 Query 281731 AAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 281789 | || ||| | | || | ||| |||||| |||||||||| || || || || |||| Sbjct 444 TACTTGTTC-TGATTTGTCGCCATTAAGAATGGCTGCTTGAACTGCGGCGCCGTAAGCAA 386 Query 281790 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAA 281849 ||||||| || ||||||| ||| || | || ||||||||||| |||| | ||| | Sbjct 385 CAGCTTCGTCCGGATTAATGCTTTTGTTCAATTCCTTACCATTGAAGAAATCTTGAAGTA 326 Query 281850 GTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTG 281909 ||| | | ||| || ||||||| || || || ||||| || || || || ||||| | Sbjct 325 GTTTTTGAATCTTTGGTATACGAGTAGAGCCACCGACTAACACGATGTCGTGAACCTGAG 266 Query 281910 ATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACA 281969 || || ||||||| || || | || || ||||| || || | || |||| Sbjct 265 CCTTGTCTAGTTTTGCGTCGCGCAACGCCTTCTCCACGGGATCGAGTGTTGATCGGAACA 206 Query 281970 AGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTCCT 282028 || | | | ||| |||||| |||||||| | || | || || ||||| ||| Sbjct 205 GATCAGCATTCAATTCCTCGAATCGCGCTCTAGTGATGGT-TGAGTAGAAGTCAATGCCT 147 Query 282029 TCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCA 282088 ||||| || ||||| | ||| || | | |||||||| || || |||| || || || Sbjct 146 TCGAATAATGAATCGATTTCGATGCTGGCCTGAGTCGATGATGAAAGTGTTCGCTTCGCT 87 Query 282089 CGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA-TTGATTCAA-ATCTGTTT 282146 | || |||| || || | | || || ||| | || | ||||| || |||| ||| Sbjct 86 CTCTCGCATGAGGTTCTCAAACGACGCAACGCTCT--CTTATTTGATGAAAGATCTTTTT 29 Query 282147 TATATTTTCTCTTGAAATCTTCAAC 282171 ||| ||| | ||||| |||| ||| Sbjct 28 TATGTTTGCGTTTGAATTCTTGAAC 4 Score = 102 bits (112), Expect = 6e-16 Identities = 233/348 (67%), Gaps = 2/348 (1%) Strand=Plus/Minus Query 281330 GCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATA 281389 || ||| ||| |||||| || || | |||| || |||||| || |||||| ||| Sbjct 902 GCCTCTTTAACCATTCTTTCGATATCTTCTTTGCTGAGTCTTCCCTTATCATTAGTGATA 843 Query 281390 GTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTG 281449 || || || || ||| || || ||||| || |||||||| |||||||| || Sbjct 842 GTGATTTTGTTCTCTTTACCCGTACTCTTGTCAGCTGCGGTCACATTGAGAATACCGTTA 783 Query 281450 GCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCT 281509 || || | ||| || ||||| ||||| || || || || | | ||||| || || || Sbjct 782 GCGTCGATATCGAACGTGACCTCAATCTGCGGTACACCGCGTGGCGCAGGGGGTATACCA 723 Query 281510 TCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAA 281569 ||| | || |||| || ||| || ||||| || | ||| || || ||| | Sbjct 722 GTCAACTCGAACTTTCCGAGCAAATTGTTGTCTTTGGTCATCGCTCGCTCTCCTTCGTAC 663 Query 281570 ATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTA 281629 | ||| || |||| | | |||||| || ||||| |||||| |||| ||| Sbjct 662 ACTTGAATCAGAACTCCCGGTTGATTGTCGCTGTAAGTGGTAAATG-TCTGCGTTTGACG 604 Query 281630 CAA-GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACC 281676 | ||||| ||||||||||| | || | | ||||||||| ||| || Sbjct 603 CGTTGGAATGGTTGTGTTTCTTTTGATCAAACTGGTCATAACACCGCC 556 >seq32350 Length=461 Score = 145 bits (160), Expect = 6e-29 Identities = 259/376 (69%), Gaps = 13/376 (3%) Strand=Plus/Minus Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTT 282571 |||||||| | |||| |||| ||||||| | ||| ||||| | | || || || | Sbjct 432 TTCATTTTTGTAAAAACCATTTATGAAATCTCTTCGGGAGAGAA--GGTT---TTAATCT 378 Query 282572 T-----GATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCC 282626 | |||| || ||| || | ||| || | ||||||| ||||| ||||||| Sbjct 377 TACCGCGATACTCTATTTCGAATTTTGGCTTTCCTTCTTCATTAATCACTTTGAATGGCC 318 Query 282627 AATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 282686 || |||||||||| ||||| | ||||| ||| |||||||||||||| |||| Sbjct 317 AAAGTTTCATATCTTTATGAACTTCCTTGTCATCGAAACTTCTACCAATTAATCTCTTTG 258 Query 282687 CATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCA 282746 | || || || ||||| || ||| ||| |||||| ||| |||| ||||| || | Sbjct 257 CGTCGAATATTGTATTTAATGAATTCTTCGCAACTTGATGTTTAGCTGAGTCTCCTATAA 198 Query 282747 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 282806 | | ||| | || ||||| | |||||||||||||| || | ||| || ||||| || | Sbjct 197 GGAGCTCTTTGTCAGTAAACGCCACATATGATGGAGTAGTCCTATTTCCCTGATCGTTGG 138 Query 282807 CAATAATTTCAACTTTACCATTT---TGCCATACACCTACACAACTAAAAGTTGTTCCTA 282863 | || || || ||||| || | | ||| |||| || || | | |||| ||| | Sbjct 137 CGATTATCTCGACTTTTCCGTGTTGNTGCAATACTCCACCATATGAATTTGTTGATCCCA 78 Query 282864 AATCAATACCAATAGC 282879 ||||||| || || || Sbjct 77 AATCAATTCCGATTGC 62 >seq95264 Length=750 Score = 127 bits (140), Expect = 2e-23 Identities = 179/249 (72%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 |||| || || | || |||| | |||||| || ||||||||||| || ||||||||||| Sbjct 10 TTAA-ACAAGAATTTGTTCCAGAATCTTTTGTTGCTTGTCTTTGAGAGTCGTTAAAATAA 68 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 | |||||||| ||||| |||| |||||| | | |||||| || | || ||| | Sbjct 69 ACTGGAACAGTGATAACAGCATTTGTTACATTTATTCCAAGGTATACATCCGCGATTTCT 128 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTT 282571 ||||| ||| | || | ||| || |||||| ||||||| ||| | ||||| ||| | Sbjct 129 TTCATCTTATTCAATACCATAGACGAAATTACTTCTGGAAAATCGT-CTTGGTTTCTCTA 187 Query 282572 TGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATAT 282631 ||| ||||||| | || || | ||||||||||||||||||||||| Sbjct 188 CAATACTTCACTTCAATCTTAGGCTTCCCTTCCTCATTAATAACTTTAAATGGCCAACTC 247 Query 282632 TTCATATCT 282640 || |||||| Sbjct 248 TTTATATCT 256 >seq2686 Length=485 Score = 107 bits (118), Expect = 1e-17 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 282343 ||||||||||| | |||||| || | |||||| | ||| | | || ||||| | | Sbjct 183 GTTCCACCACCTAAATCAAAGATTACTACATTTGTGTCTACCTGATATTTCTTATCTAAA 124 Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| |||||||| || ||||| || |||||| ||| | ||| ||||||| Sbjct 123 CCATAAGCAATGGCAGCAGCTGTCGGTTCGTTGATAATTAGCAATATATTTAGACCAGAT 64 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462 | |||| |||||||||| ||||| ||||| || || || ||| | | ||||| || Sbjct 63 AAAGTTCCATCATCTTTAGTCGCTTGCCTTTGAGAGTCATTGAAACAAGATGGAACTGT 5 >seq93545 Length=15837 Score = 102 bits (112), Expect = 6e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 |||| || | ||| ||||||| || ||||| |||||||| || || | | ||| |||| Sbjct 15661 TTTTGTCCATACCGTACGCAATTGCGGCAGCGGTTGGTTCGTTGATCACACGCAACACAT 15720 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 | | || || || ||| || ||||||||||| |||||||| || || || ||||||| Sbjct 15721 TCAAGCCTGCGATCTGTCCCGCGTCTTTAGTGGCCTGTCTTTGCGAGTCATTGAAATATG 15780 Query 282453 CAGGAACAGTAATAACGGCAT 282473 | |||||||| || || |||| Sbjct 15781 CGGGAACAGTTATCACCGCAT 15801 >seq11063 Length=374 Score = 102 bits (112), Expect = 6e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 282353 AAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCT 282412 || || |||||| |||||| ||| ||| |||||||| || || |||||| | | Sbjct 183 AATGCTGCAGCAACCGGTTCAGGAATTATTTCTAAAACATTTAGTCCCGCAATTGTGGCC 242 Query 282413 GCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA 282472 |||||||| || || ||| | ||||||||||||||||||||||| || || ||||||||| Sbjct 243 GCATCTTTTGTTGCCTGTTTCTGTGAATCGTTAAAATATGCAGGTACTGTTATAACGGCA 302 Query 282473 T 282473 | Sbjct 303 T 303 Score = 87.8 bits (96), Expect = 1e-11 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 86131 GCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAA 86190 ||||| ||| |||||| |||||||| | ||||| || ||||||||| | || | | Sbjct 186 GCTGCAGCAACCGGTTCAGGAATTATTTCTAAAACATTTAGTCCCGCAATTGTGGCCGCA 245 Query 86191 TCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAACTGCTTTA 86250 || ||||| ||| |||||| || ||||||||||| ||||| || ||||| || || Sbjct 246 TCTTTTGTTGCCTGTTTCTGTGAATCGTTAAAATATGCAGGTACTGTTATAACGGCATTC 305 Query 86251 TTAATA 86256 |||||| Sbjct 306 TTAATA 311 >seq34509 Length=4334 Score = 100 bits (110), Expect = 2e-15 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 637111 ACAAAGAAAATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGA 637170 |||||||| | || |||||||| | | |||||||| || ||||| |||||| | ||| Sbjct 1792 ACAAAGAATAGTA--GTCGATTACAGTGCACCAAATATAGCGAAAGAGATGCATGTCGGA 1735 Query 637171 CATTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACAC 637230 ||| | || || |||||||||||||| | | | || | || ||| | || || Sbjct 1734 CATCTTAGGTCTACTATTATTGGTGATGGTGTGTCCAGAATTTTGGAATTTCTAGGTTAC 1675 Query 637231 GATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTA 637284 |||||| ||| | |||||| | || || |||||||| ||||| ||||||||| Sbjct 1674 GATGTTCTACGTGTGAATCATATCGGAGACTGGGGAACGCAATTTGGTATGTTA 1621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3735644969629170