Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06] 101,545 sequences; 113,565,242 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq100917 136 8e-27 seq94648 132 9e-26 seq95989 93.3 8e-14 seq39385 87.8 4e-12 >seq100917 Length=15418 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| ||||| || | || || || || ||||||||||| || ||||| | Sbjct 7786 CCGCCTCTCAGGCGCAGCACCAGATGAAGTGTCGACTCTTTCTGTATGTTGTAATCGCTT 7727 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || |||| |||||||||| ||||| ||||| || || | | || ||||| ||||| Sbjct 7726 AGTGTTCTTCCGTCTTCTAACTGTTTGCCAGCGAATATCAACCGCTGCTGATCAGGAGGA 7667 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || |||||||| || || ||||| || || || || || || ||| Sbjct 7666 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCGATGGTGTCCGACGGCTCCACT 7607 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || ||||| || || | ||||| || |||||||||||| Sbjct 7606 TCGAGCGTGATTGTCTTACCAGTGAGTGTCTTCACGAATATCTGCATT 7559 >seq94648 Length=7301 Score = 132 bits (146), Expect = 9e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | ||| ||||||||||| || || || |||||||||| |||||||| | Sbjct 5066 CCACCTCTGAGACGAAGAACTAAGTGAAGTGTCGACTCTTTCTGTACGTTATAATCGCTT 5125 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | || || ||||||| |||||||| || |||| || |||||||| || || ||| Sbjct 5126 AAAACTCGTTCGTCTTCCAGTTGTTTGCCGCCAAATATCAGTCTTTGCTGGTCAACAGGA 5185 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || | || ||||| |||||||| ||||| || || | || | ||||| || Sbjct 5186 ATGCTCTCTTTATCGGCAATCTTTGACTTTACCAGTTGAACACTGTCTGTCGGTTCCACG 5245 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || || ||||| |||| ||||| ||||| ||||||||| Sbjct 5246 TCTAACGTAATAGTTTTGCCATTCAATGTCTTAACAAAGATCTGCATT 5293 Score = 89.7 bits (98), Expect = 1e-12 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | ||| | || | ||| ||||||| || |||| |||||| | Sbjct 5294 CCTCCTCGAAGACGGAAAAGCAGGTGTAGAGTAGCGTCCCGTTGTACGCCGTAATCACTT 5353 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | || | |||||||| |||| ||| | || || |||| || || |||||||| Sbjct 5354 ATCACTCCGCAGTCTTCTAACTGTTGGCCACCGAATATCAGTCGCTGCTGGTCTGGAGGA 5413 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||| ||||| || ||| ||||| |||| || || ||| | | || Sbjct 5414 ATGTGTTCCTTCTCTTGTATGATTGTCTTTACCGTTTCGATGGTGTCAGACGAAGCCACG 5473 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTA 82815 || | ||| |||||||| || || | ||||| ||||||| ||||||||||| Sbjct 5474 TCTACAGTAATCGTCTTACCATTCCATGTCTTCACAAATAACTGCATTATTA 5525 >seq95989 Length=12046 Score = 93.3 bits (102), Expect = 8e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| ||||| || || |||||||||||||| || || ||||||||| | Sbjct 11928 CCTCCTCTGAGACGAAGAACCAAATGAAGAGTAGATTCTTTTTGGATGTTATAATCACTT 11987 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | | | || || ||||||||||| || || || || | || ||| ||||| ||||| Sbjct 11988 AAAGTGCGTCCATCCTCTAGTTGTTTGCCTGCGAATATCAATCGTTGCTGATCGGGAGG 12046 >seq39385 Length=5141 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 ||||| ||||||||||| || |||| || ||||| |||||||| ||||| ||||| Sbjct 206 TTCTGAATATTATAATCGCTGAGTGTTCTTCCATCTTCCAGTTGTTTGCCAGCGAAGATC 147 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAAT 82723 |||| || ||||| ||||| || |||||||| || ||||| Sbjct 146 AGTCGCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAAT 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980549798323755