Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06] 101,545 sequences; 113,565,242 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq72717 131 4e-25 seq5419 93.3 1e-13 seq98540 89.7 1e-12 >seq72717 Length=3270 Score = 131 bits (144), Expect = 4e-25 Identities = 550/859 (64%), Gaps = 11/859 (1%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 ||||||||||||| ||| ||||| |||||||| | | | | | | ||| Sbjct 1347 TATTTTGGTTTCAGAACACTTGAGAAATCTTATTTATTAAAAATTGAAAACAAAGTAATT 1288 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 |||||||| || ||||||| | | | ||| | | || |||||| |||||||| | Sbjct 1287 GAACGTCCACAGCACATGTATATGAGAGTTTCTTTAGGAATTCATTCTGATGATATTGAT 1228 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAG--CTATTCATGCTACTCCTA 110481 || || | || || | || || || |||| | | ||||||| || | || | Sbjct 1227 GCAGTCTTGCAAACGTA-CAACTA-TATGTCAAAAAACTGGTTTATTCATTCTTCACCAA 1170 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTA 110541 | || | ||||||||||| | | | |||| || | ||| ||||| || ||| Sbjct 1169 CGTTAATGAACGCAGGAACAATTTGTCCACAAATGTCAAGTTGTTTTCTATTAACAATGC 1110 Query 110542 ACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAA-CTGCTCTTATTTCTAAA 110600 | || ||| | ||||||| |||| | | || ||| | ||| ||| || | ||| Sbjct 1109 ATGAAGATAGTGTTGAAGGAATTTTTAAGACT-TTATATAAATGTGCAAAAATAGCGAAA 1051 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 | ||||| |||||||| | | | || | |||| | || || ||||||| || Sbjct 1050 CATTCTGGTGGAATTGGGCTCAATATACACAAAGTTCGTTGTAATGGTACAAATATTGCT 991 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 | | ||| |||| ||| | || |||||| | || || | ||| |||| || Sbjct 990 TGTACTAGTAGTGTATCAAACGGAATAGTGCCAATGATCAGGGTTTACAATAACACAGCG 931 Query 110721 AAATATGT-GAATCAAGGTGGTAAGAGAAA---TGGCTCATTTGCTATCTATCTCGAACC 110776 || | | |||||| |||| || | || ||| | ||| | || ||| | ||| | Sbjct 930 CGATTTTTCAAATCAA-GTGGAAACAATAAGCCAGGCGCGTTTACAATTTATGTAGAAAC 872 Query 110777 TTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACA 110836 |||||| |||| ||||| || || | || | |||||| || || |||| Sbjct 871 ATGGCATGCAGAAATATTCGAGTTTCTTGAGTTGAAAAAAAATTTTGGTGCAGAGGAACT 812 Query 110837 AAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCA 110896 |||||| | ||| | |||||||| | |||||| |||||||||| ||| || ||| Sbjct 811 AAGAGCGAGAGATCTTTTTTATGCCTTATGGATTCCAGATTTATTTATGCGTCGAGTTTT 752 Query 110897 AGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATA 110956 || ||| |||||| | ||||| ||||||| | ||| ||| || || | | Sbjct 751 TGAGAATCAATATTGGTCTTTAATGTGCCCTCATCAATGTCCAGGTTTAGAAGACATTTG 692 Query 110957 TGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACA 111016 || | |||||||| | ||||| ||||| |||||| || || | || ||| | Sbjct 691 GGGTGATGAGTTTGACAAGCTTTATGAAAATTATGAAGAAAAAAAAATGTACACTAAAAA 632 Query 111017 AATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCC 111076 | || ||| || |||||||| || | ||||| |||| ||||| || | ||| Sbjct 631 AGTTAAAGCAATTGATCTTTGGTTTCTTATTATAGAATCCCAAGCAGAAACAGGTAATCC 572 Query 111077 TTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAAT 111136 | ||| | || |||||| |||| ||| | || |||| ||| | || ||||| Sbjct 571 ATTTATGCTTTACAAAGATAGCTGCAATCAAAAAACAAACCAAAAAAATATTGGCACAAT 512 Query 111137 TAAGTCTAGTAATTTGTGC 111155 ||| | | | ||||| ||| Sbjct 511 TAAATGTGGAAATTTATGC 493 >seq5419 Length=656 Score = 93.3 bits (102), Expect = 1e-13 Identities = 132/185 (71%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 110676 TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAA 110735 |||| |||| |||||||||||||| | || |||||| | ||||||| ||| | |||| Sbjct 467 TCAAATGGAATTGTTCCAATGTTACGTGTTTTCAACAATACTGCAAGATACATTGATCAT 526 Query 110736 GGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATA 110792 || || || ||| ||| || | || || | | | ||| | |||||| |||||||| Sbjct 527 GGAGGAAAAAAAAGACCTGGAGCAATGGCAATTTTTGTTGAAACATGGCATGCAGATATA 586 Query 110793 TTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTA 110852 || ||||| ||||| | |||||| | || |||||| | | | || | |||||| Sbjct 587 TTGGAATTTCTAGAATTAAAAAAAAATAATGGTCCTGAAGAGCTACGTGCTAGAGATTTA 646 Query 110853 TTTTA 110857 ||||| Sbjct 647 TTTTA 651 >seq98540 Length=1769 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 304889 CAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCTCAA 304948 ||||| ||| | || || || | |||||||| ||| |||| || | |||| ||| Sbjct 1161 CAATACCATGTGGCGACGTTTGTTGATAATGACATTCCTGGCATACCGAAGGCTCAGCAA 1102 Query 304949 AGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATT 305008 | |||||| |||| | || ||||| || | | ||| ||||||||||| ||| Sbjct 1101 AAGTCTGGCCGACCGCTCAAATCTATTAAACAGAGATTGAAATCGAAAGAGGGTCGGATT 1042 Query 305009 CGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGAT 305068 || |||||||| ||||| ||| | ||||||||| || ||| ||| || ||||| ||| Sbjct 1041 CGTGGTAATCTTATGGGTAAAAGAGTTGATTTTTCCGCTCGAACTGTTATTACACCCGAT 982 Query 305069 TCTCAAATTA-GTCTTCATGAATTAGGAGTTCC 305100 || || ||| || | |||| | || ||||| Sbjct 981 CCT-AATTTACGTATCGATGAGGTCGGCGTTCC 950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185268702769745