Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06] 101,545 sequences; 113,565,242 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq87608 93.3 5e-14 seq26117 93.3 5e-14 seq72717 84.2 3e-11 >seq87608 Length=6889 Score = 93.3 bits (102), Expect = 5e-14 Identities = 238/361 (66%), Gaps = 6/361 (2%) Strand=Plus/Minus Query 168276 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 168335 ||||||| ||||||||||| || ||||| |||||||| || ||| |||||| || | Sbjct 3114 AACCCGTGCCGATACCCTCACCGCCATTCACCAGAACCATCGGAAGTATTGGCACATAAA 3055 Query 168336 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 168395 | || ||||| || | |||||| | | ||| ||||||| || ||||| | Sbjct 3054 ATTCAGGCTCGATTTTCAAATTATCGTCGTAAAGATAATTGAGAAGCGGGTCATCCTGTG 2995 Query 168396 GATCAAAGATCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 168455 | || || |||||||| | ||| ||||||||||||| | | || || Sbjct 2994 GCGAGAAAATTTTTCGGGCCAAAGGACTAAGCATTGTAAAGATATAACGAG---GACTCG 2938 Query 168456 CA---TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGA 168512 || || || || ||| || ||||| ||||||||||| ||| | ||| | || | Sbjct 2937 CAGCGTCTTTTCCGCCCTGAAGTCGCGTTCCAAACTGACCGATCGGTTGAAGTAAGTTAA 2878 Query 168513 TATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTT 168572 |||| || || | |||| | || || |||| ||| || | ||||| ||| Sbjct 2877 TATTATTGCTGCCGACATAGTTTTGGGCTAAATTGATAATAGTTGACATTAGAGACGCTT 2818 Query 168573 CACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCT 168632 | ||||| ||||| || | ||| | || | |||||| || |||||||||| || Sbjct 2817 CTCCGTGATGGTATGCCGAATGCTCGCCCACCGAACCCGCCAGTTGTGCCACTTTCACCT 2758 Query 168633 C 168633 | Sbjct 2757 C 2757 >seq26117 Length=267 Score = 93.3 bits (102), Expect = 5e-14 Identities = 179/264 (68%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 104920 TGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTT 104979 ||| |||||||| ||||| ||||||||| || || ||| | || || | ||||| Sbjct 264 TGGAACACCATATATGCTCTACAAAGACAGTTGCAATAGAAAAACAAACCAGATAAATTT 205 Query 104980 GGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGA 105039 || || || | || ||| | ||||||||||| | | |||||| |||||||| Sbjct 204 AGGCACAATAAATTGCTCAAATTTATGTACAGAAATAATACAGTTTACATCTAAAGATGA 145 Query 105040 GACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAA 105099 || | || || ||| | || | ||||| | ||||| ||| ||| | ||| Sbjct 144 GATATCAGTATGCAACTTAGCCACTATCGCATTAAACAAGTTTGTTGATAAGTCAAAAAA 85 Query 105100 GACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAG 105159 |||||| |||| |||| | | |||||||| |||| | | || |||||| || | Sbjct 84 AACATTTAATTACTTAAAATTAAAGGAAGTTACTAAAATTATTACTGTAAACCTTAATAA 25 Query 105160 AGTTATTGATAGAAATTTTTACCC 105183 | ||||||| | ||||||||| || Sbjct 24 AATTATTGACATAAATTTTTATCC 1 >seq72717 Length=3270 Score = 84.2 bits (92), Expect = 3e-11 Identities = 232/352 (66%), Gaps = 8/352 (2%) Strand=Plus/Minus Query 104906 TCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 104965 || ||| | || || |||| |||| |||||||||||||| ||| || ||||| | Sbjct 594 TCCCAAGCAGAAACAGGTAATCCATTTATGCTTTACAAAGATAGCTGCAATCAAAAAACA 535 Query 104966 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTT 105025 || ||||| ||| | || || || || ||| | || || ||||| | ||||| Sbjct 534 AACCAAAAAAATATTGGCACAATTAAATGTGGAAATTTATGCACTGAAATTATTCAATTT 475 Query 105026 AC-AGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT 105084 | || | || | || | |||| || ||| | || || |||||||| || | || Sbjct 474 TCTAGTCCAA-AAGAAATATCTGTTTGCAACTTAGCTTCTATCGCTCTAAATAAATTCGT 416 Query 105085 GGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCAC 105144 | || | || || || ||| ||| ||||||||| | || || ||||| ||||| Sbjct 415 GAATAAAACAACTAAAACTTTTAATTTTGAAAAACTAAAAAAAATTGTGAAAATAGTCAC 356 Query 105145 CAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAA 105201 ||| || || | | |||| |||| ||||| ||||||| | |||| || | Sbjct 355 AGTAAATCTTAATAAAATTATAGATAAAAATTATTACCCCTTACCTGAGTGTGAAC---T 299 Query 105202 ATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGAT 105253 ||| || | | ||| || ||||| || | ||||| || ||||| || ||| Sbjct 298 ATCAAACAAAAAACATCGACCAATCGGAGTTGGTGTCCAAGGTCTAGCTGAT 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582520459775800