Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steganacarus_20magnus_20[genbank_20GCA_5F000988885.1_202015-05-06] 101,545 sequences; 113,565,242 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq100917 123 6e-23 seq94648 87.8 4e-12 seq39385 84.2 5e-11 >seq100917 Length=15418 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || || || || || ||||| || | ||||||||| | ||||| || || Sbjct 7772 CAGCACCAGATGAAGTGTCGACTCTTTCTGTATGTTGTAATCGCTTAGTGTTCTTCCGTC 7713 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||||| ||| || |||||||| || | || || || || || ||||| || |||||||| Sbjct 7712 TTCTAACTGTTTGCCAGCGAATATCAACCGCTGCTGATCAGGAGGAATGCCCTCCTTGTC 7653 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || ||||| ||||||| ||||||||||| || | ||||| || | |||||| || Sbjct 7652 CTGAATCTTCGCCTTCACATTCTCGATGGTGTCCGACGGCTCCACTTCGAGCGTGATTGT 7593 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||| || || | || || | ||| | |||||||| Sbjct 7592 CTTACCAGTGAGTGTCTTCACGAATATCTGCATTTT 7557 >seq94648 Length=7301 Score = 87.8 bits (96), Expect = 4e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 ||||||| ||| | ||| |||| || ||||| || ||||| || ||||| |||||| Sbjct 5366 TCTTCTAACTGTTGGCCACCGAATATCAGTCGCTGCTGGTCTGGAGGAATGTGTTCCTTC 5425 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 ||||| || || ||| || | |||||||||||| || | ||||||||| || ||| Sbjct 5426 TCTTGTATGATTGTCTTTACCGTTTCGATGGTGTCAGACGAAGCCACGTCTACAGTAATC 5485 Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || | || || | || | |||||| Sbjct 5486 GTCTTACCATTCCATGTCTTCACAAATAACTGCATT 5521 >seq39385 Length=5141 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || || | ||| |||||| | ||||| |||||||| || || || ||||||||||| Sbjct 206 TTCTGAATATTATAATCGCTGAGTGTTCTTCCATCTTCCAGTTGTTTGCCAGCGAAGATC 147 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGAT 225626 ||||| || || ||||| ||||| ||||||||||| || || Sbjct 146 AGTCGCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGAAT 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190979662872230