Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3821 138 1e-27 seq15467 102 1e-16 >seq3821 Length=102291 Score = 138 bits (152), Expect = 1e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 |||||||||||||| || || ||||| ||||||||||| || || | ||| ||||| Sbjct 84876 AAATTTTCATTCACAATGCCATCACTCGCTGCAAAAAATGCTAAAATGTGTGAAATAAAG 84935 Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 24638 | ||||| || || ||| || | |||||| | |||||| |||| || |||||| Sbjct 84936 TGCTTTTCTTCGGGCTTTAACTTTTCCCAATCTCCTAGATCTTTTGATAAGTCAACTTCT 84995 Query 24639 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 24698 || | ||||| || || || || |||||||||||||| | ||| || || ||||| | | Sbjct 84996 TCAGCAGTCCAGAACGAAGCTTCAGCCTTTTTATACATCTGCCATATATCTTGATACTCA 85055 Query 24699 ATTGGAAAAATAACAAATCTA 24719 || ||||| || ||||||||| Sbjct 85056 ATGGGAAATATTACAAATCTA 85076 Score = 134 bits (148), Expect = 2e-26 Identities = 163/220 (74%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||| ||| || ||||| ||| ||| || || || ||||||| || | ||| | Sbjct 78312 CCTCATCTCGACTTATCAATTCATTGCTAAATGTAAGGCCAGGCATTAAACCTCTCTTCT 78371 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| |||||||| |||||||| ||||||||||| ||||||||||| || ||||| | Sbjct 78372 TCAGCCAGAATATGGATGCAAATGAACCAGAAAAGAATATTCCTTCTACAGCAGCAAATG 78431 Query 24277 CAATAAGTCTTTCTCCATAACCGGC--GC-TGTCATGTATCCACTTTTGAGCCCAATCGG 24333 ||| | || ||| ||| | || || | | || ||||| || ||||||||| | Sbjct 78432 CAACGATTCGTTCACCAAAGGATGCATGCGTATGATTAATCCAATTCAAAGCCCAATCAG 78491 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 | ||||| || ||||| | | || || |||||||| || Sbjct 78492 CTTTCTTCTTCACACAGGAAAGAGTTTCAATAGCATTGAA 78531 >seq15467 Length=153806 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||| |||||||| ||||| || || |||| ||| || | |||||| || || || || | Sbjct 63800 TACCTGAAATTCCCCAGATAAAACCCTCCTAGTATAGAAATTACTAGTGTATGGCTCTAT 63859 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 ||| ||||||||||| | |||||| |||||||| || || |||||||| || || | || Sbjct 63860 AGATTCATTATTTCCAAGAATTTGCGCAGTTGAAGCTGTTGGCATAGGGGCTACAAGCAA 63919 Query 53269 ACTATTTCT 53277 ||| || || Sbjct 63920 ACTGTTCCT 63928 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818 || |||||||| |||||||| |||| |||||||||||||| | |||||| ||| Sbjct 76390 ATTTCAGTGCATAGATTACTGCACTGTATGGTTCCTAAATTCTTTTGATTTGATTTTCGA 76449 Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATC 53878 ||||| ||||| ||||| | || |||| || || ||||||||||| ||||| ||||| Sbjct 76450 TTACAAGCATCTTTATACAACATATATGGGGTTCCTGTTTCAATCTGAGATTCAATAATT 76509 Query 53879 GCTTTCCA 53886 || | ||| Sbjct 76510 GCATACCA 76517 Score = 100 bits (110), Expect = 3e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 54769 ACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAAT 54828 ||||||| |||||||| ||||| || |||||||||| ||| || | || || || || Sbjct 143694 ACTAAATGACTTTTTTGTCTCTTTATGCAGATTTGATATGGCAATGCGTGCAGCAAGGAT 143753 Query 54829 GGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAA 54888 ||||||||| ||||||| |||||| ||| ||||| ||||| || | || | || | Sbjct 143754 GGCATAATCAGGATGTTTTGTAGTCATAGTCGCTGCAATTTCTGCAGCCAAGTTATCAAG 143813 Query 54889 TTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || ||||| || ||| ||| | || | || || ||||| Sbjct 143814 TTCAACAGTTGTAACACCAGGATACAAGCCATTTATGACTTTCAT 143858 Score = 96.9 bits (106), Expect = 4e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 53941 ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCATCCGGAC 53999 ||||||| |||||| || || ||||| |||| || ||| || |||||| |||| Sbjct 76864 ATACAATTCTTCAAATTCCTCCCCCCAG-CATTCATGAAGTCCTGGTGATTCATTTGGAC 76922 Query 54000 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 54059 |||| || |||| | |||| | | |||||||||||||| | ||| |||||||| | Sbjct 76923 ACATTAAACTCCACATTTCGTCCTTTTCTACTCGTTTCATAAATAAATCTGGAATCCACA 76982 Query 54060 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 54119 || ||| |||||||||| || || || || || || |||||||| || | ||| | Sbjct 76983 ATGCATAAAACAGATCTCTGGCCCTCTGCTCTTCTTTGCCAGTATTCTTCTTTAAATCTA 77042 Query 54120 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGG 54174 || | | || || | |||||| || || || || || | | | ||||||| Sbjct 77043 AAAAGTCAAATATGTCTGCATGCCAAGGCTCTAAATAAATTGCAAAAGCTCCAGG 77097 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 52876 CCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATT 52935 |||||| ||||| ||||| ||||||| ||| |||| | || || || || || | ||| Sbjct 55141 CCATCCATAAAAGTGCATGCTTGTTAATTTTCCATAATTTGGTTCAGCAATGTGAACATT 55200 Query 52936 CATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTT 52995 | ||| ||||||||||| || | || || || || ||||||||||||| ||| | || Sbjct 55201 TAGAGACTGACTTTGATCTATATAAGCACCTCTATCAGCAGCCATTTTTAAGATATTTTT 55260 Query 52996 TTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 || || || ||||||| || ||| | | ||| | ||| || |||| Sbjct 55261 CTGCGGTATCTCCCAAACTGTACGATATAATTTCTTGAGATCATCAGGAA 55310 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 53588 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTG 53647 || || |||||||||||||| |||||||| ||||| || | ||| | || ||||| Sbjct 73674 TCAGGGATAGGATAATAATTGATATCTATTATTTTGTTTAAATTTTTTGTTATAACTTTC 73733 Query 53648 ACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATTACAAACATGTTCAATGCA 53707 || | ||||||||| ||||||||| | | ||| | ||| | |||| | ||| Sbjct 73734 GTGACTTGCTTCAGTTTTGCAAAATCAAACTCTTGATCCTTGACATATCTGTTGAGAGCA 73793 Query 53708 ATAGATGCCAGATTACAAACGGCTACCT 53735 |||||||||||||| || || || |||| Sbjct 73794 ATAGATGCCAGATTGCACACAGCAACCT 73821 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 54325 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCAT 54384 ||| || |||||||| || |||||||| |||||||| ||||| |||||||| || || | Sbjct 102962 TTTTGAAATTAATGCACAACGTTTTAAAGTATCATAAATGCCTTCTATACTGTCTTCAGT 103021 Query 54385 CAT-GTTAAGTAGAAAACAGCTA 54406 ||| |||||| |||||||||||| Sbjct 103022 CATTGTTAAG-AGAAAACAGCTA 103043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593212090387440