Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq12019 172 8e-38 seq12235 104 4e-17 seq16427 95.1 2e-14 seq17821 93.3 6e-14 seq4753 84.2 3e-11 >seq12019 Length=383594 Score = 172 bits (190), Expect = 8e-38 Identities = 181/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || |||||||| ||| |||| |||| | | | Sbjct 132112 ATGCAGATTTTTGTTAAAACTCTTACTGGTAAAACTATCACTTTAGAAGTTGAGCCTAGT 132053 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| ||| | ||| ||||| || |||||||||||||| || ||||||||| Sbjct 132052 GATACAATAGAAAATGTTAAAGCTAAAATCCAGGATAAAGAAGGTATTCCTCCTGATCAA 131993 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| |||||||| || || ||||||||| | || || ||| || || ||| Sbjct 131992 CAAAGGCTTATATTTGCAGGGAAGCAGTTAGAGGATGGACGTACTTTATCGGACTACAAT 131933 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| |||||||| ||| |||| ||||| || | || |||| ||||| ||| || Sbjct 131932 ATTCAGAAAGAATCGACTCTGCACTTGGTACTAAGGTTGAGAGGAGGTATGCAAATTT 131875 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| || || || ||||| || ||| | ||| | ||| | | | Sbjct 132796 ATGCAGATATTTGTGAAGACTCTGACTGGAAAAACCATCACTTTGGAGGTAGAACCCAGT 132737 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| ||||| ||||||||||| |||||||| || || |||||||| Sbjct 132736 GATACAATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 132677 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| ||||| ||||| || || || ||| | || ||| | |||||||||| Sbjct 132676 CAGCGACTTATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACACTCTCAGATTATAAT 132617 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || |||| || ||||| || | |||| ||||| Sbjct 132616 ATTCAAAAAGAATCTACCCTGCACTTAGTTTTGCGACTTAGAGGAGGTAT 132567 Score = 159 bits (176), Expect = 5e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || ||||| || || ||||| || ||| | ||| | || ||| Sbjct 133025 AATGCAGATCTTTGTGAAAACACTTACTGGAAAAACCATCACTTTGGAGGTGGAGCCAAG 132966 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| ||||| || || ||||| || ||||| || || ||||| || Sbjct 132965 TGATACCATTGAAAATGTAAAAGCTAAGATCCAAGACAAGGAAGGAATTCCTCCTGACCA 132906 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| ||||| || ||||||||||| |||||||| ||| ||||||| || |||||||| Sbjct 132905 ACAGAGGCTAATATTTGCAGGAAAGCAATTAGAAGATGGTCGAACCTTGTCTGATTATAA 132846 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| ||| | ||||| || | | ||||| |||||||| Sbjct 132845 CATTCAGAAGGAATCCACTCTTCATTTAGTCCTCAGGTTACGTGGTGGTAT 132795 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || ||||| ||||| |||| |||| | | | Sbjct 132568 ATGCAGATCTTTGTTAAAACTCTTACTGGAAAAACCATAACATTAGAAGTTGAGCCCAGT 132509 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| ||| | ||| ||||| ||||| || || || || ||||| ||||| Sbjct 132508 GATACAATAGAAAATGTCAAAGCAAAAATCCAAGACAAGGAGGGCATTCCACCCGATCAG 132449 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| ||||| || || || || || ||| | || |||||| |||||||| Sbjct 132448 CAAAGGCTTATATTTGCTGGTAAGCAGTTGGAAGATGGACGTACATTATCTGATTATAAC 132389 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| ||||| |||||| | ||| || | | ||||| ||||| Sbjct 132388 ATCCAAAAAGAGTCAACATTGCATCTTGTTCTAAGGCTTCGAGGAGGTAT 132339 Score = 140 bits (154), Expect = 5e-28 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 124564 CAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT-TTAAAACAG 124622 |||| ||||||||||| | || | || | | |||||| ||| ||| ||||| || Sbjct 131329 CAGGTAAAACTATAACGTTGGAAGTCGAGCCCAGTGATACTATTGAAAATGTTAAAGCA- 131271 Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| ||||||||||||||||| ||||| ||||| || ||| | |||||||| || || Sbjct 131270 AAAATACAAGATAAAGAAGGTATTCCACCAGATCAGCAGAGGTTGATTTTTGCTGGTAAG 131211 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || |||| ||| | |||||||| ||| |||||||||||||| || ||||| || ||| Sbjct 131210 CAGCTAGAAGATGGCAGAACATTATCAGACTATAATATTCAAAAGGAGTCAACATTACAT 131151 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 | ||||| | | ||||||| || ||| || Sbjct 131150 CTTGTTTTGAGGCTGAGAGGTGGCATGCAAATTT 131117 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || || || || | || ||||| | | | Sbjct 132340 ATGCAGATCTTTGTTAAAACTCTTACTGGAAAGACCATTACATTGGAAGTTGAACCCAGT 132281 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| ||||| |||||||| ||||| || |||||||||||| Sbjct 132280 GACACAATTGAAAATGTGAAAGCTAAAATCCAAGATAAGGAAGGCATCCCACCTGATCAA 132221 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || || || || ||| | || |||||| ||| ||||| Sbjct 132220 CAGAGGCTCATATTTGCTGGTAAGCAGTTGGAAGATGGGCGTACATTATCAGACTATAAC 132161 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| |||||||| ||| ||||| | || || | | ||||| || || Sbjct 132160 ATTCAGAAAGAATCTACTCTGCATCTAGTGTTGAGGCTTCGAGGAGGGAT 132111 Score = 134 bits (148), Expect = 2e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| || || || ||||| || || || ||||| | || | | | Sbjct 131884 ATGCAAATTTTTGTAAAAACTCTTACTGGCAAGACCATTACGTTAGAGGTAGAGCCCAGT 131825 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| ||||| || ||||||||||| || ||||||||||| Sbjct 131824 GACACCATTGAAAACGTGAAAGCAAAAATCCAGGATAAAGAAGGCATTCCACCTGATCAG 131765 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| ||||| || ||||||||||| ||| |||| || | ||| |||||| Sbjct 131764 CAGCGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCAGACTATAAT 131705 Query 124719 ATTCAAAAAGAATCAAC 124735 |||||||||||||| || Sbjct 131704 ATTCAAAAAGAATCTAC 131688 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || ||||| ||||| || || |||| |||| | | | Sbjct 131656 ATGCAGATTTTTGTGAAAACTCTTACAGGAAAAACGATTACATTAGAAGTTGAGCCTAGT 131597 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| ||||| ||||| |||||||||||||| || || || ||||| Sbjct 131596 GACACCATCGAAAATGTAAAAGCAAAAATCCAAGATAAAGAAGGAATCCCTCCAGATCAG 131537 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || ||||||||||| || ||||| | || ||| | || || | || || || Sbjct 131536 CAGAGACTTATTTTTGCTGGGAAACAGCTTGAAGATGGCCGTACTCTGTCTGACTACAAC 131477 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||| | ||||||||||| | ||| ||||||| || Sbjct 131476 ATTCAAAAAGAGTCTACTCTTCATTTGGTTTTGAGATTAAGAGGTGGAAT 131427 Score = 100 bits (110), Expect = 4e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 124564 CAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGA 124623 |||| || || |||||| | || | ||| ||| ||| ||||| ||| | || | Sbjct 125604 CAGGTAAGACGATAACTCTTGAAGTGGAACCAAGTGACACAATAGAAAATGTGAAGGCAA 125545 Query 124624 AAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAAC 124683 |||| |||||||||||||| || || || ||||| ||| | ||||||||||| || || | Sbjct 125544 AAATCCAAGATAAAGAAGGAATTCCTCCAGATCAGCAACGTCTTATTTTTGCTGGCAAGC 125485 Query 124684 AATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATT 124743 | | || ||| | |||| | |||||||| ||||| || ||||| ||| ||||| Sbjct 125484 AGCTTGAAGATGGCAGAACCCTTTCTGATTATAACATTCAGAAGGAATCTACTCTGCATC 125425 Query 124744 TGGTT 124748 | ||| Sbjct 125424 TTGTT 125420 >seq12235 Length=595988 Score = 104 bits (114), Expect = 4e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 |||||| || |||||||| || | ||||||||||| ||||| || || || ||| |||| Sbjct 179327 AGGTATTCCTCCTGATCAGCAGCGACTTATTTTTGCTGGAAAGCAGTTGGAAGATGGTCG 179268 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 |||||| |||||| |||||||| || || || || | || || ||| | |||||||| Sbjct 179267 TACATTATCAGATTACAATATTCAGAAGGAGTCTACACTTCACTTAGTTCTGCGTTTACG 179208 Query 124760 AGGTGGT 124766 |||||| Sbjct 179207 TGGTGGT 179201 >seq16427 Length=816503 Score = 95.1 bits (104), Expect = 2e-14 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 202868 CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNN 202927 || ||||| |||||||||||||| ||||| | ||||||||||||| | || Sbjct 446408 CCCACATAACCATTTGGATCACGCCCATCCAACGAATATTTATCATTGAGATATATCGCT 446467 Query 202928 NNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATT 202987 | ||||||||| || || ||||| ||||| ||||| || ||||||||||| Sbjct 446468 ATCTCCAGTGCTTCTTCAGGACTTTGAGTCCACTCTAAAATTTTCTTTGCCCAATACATC 446527 Query 202988 CTTAAATATCCATGCATTTTACCATAGATAATCATTTG 203025 | || ||||||||||||| || | | ||||| ||| Sbjct 446528 CGCAAGAATCCATGCATTTTTCCTTCCACAATCAATTG 446565 >seq17821 Length=590154 Score = 93.3 bits (102), Expect = 6e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 205617 AGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttat 205676 ||||||||| ||||| | ||| || ||| | ||| || | |||||| || || Sbjct 269896 AGGATTCCAAGCTGTCATTATAATTCGCCTATCATTAGGATTTTCTTTTATCAGTTTGAT 269837 Query 205677 AATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTT 205736 | || | |||||| || | |||| ||||| | | ||| |||||| | ||| || Sbjct 269836 TACATACGCTAATTGGTCTACACCTTCTCCAGTATAGTCTTTATTCATATCTACATAGTT 269777 Query 205737 AGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCT 205785 || |||||||| ||||| |||||||||||||| |||||||| |||||| Sbjct 269776 TGCCCCAAAATGTCGCCACTGAAAACCATAAACAGGACCTAAGTCACCT 269728 Score = 87.8 bits (96), Expect = 3e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 205838 CATCCCAAATATGGATTCCTTTATTTTTTAGAATATTTGTATTAGTTGATCCAGATATAA 205897 ||||||| || || | ||||| | ||||| |||| | | |||||| |||||| |||| Sbjct 266156 CATCCCATATGTGCACACCTTTTTCTTTTAAAATAGTAGCATTAGTGCTTCCAGAAATAA 266097 Query 205898 ACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAA 205957 |||| | | ||||||| || ||||||||||| | | ||| ||||||| |||||||| Sbjct 266096 ACCACAGAAGTTCTTCACATATGCCTCTCCAAAAAACTTTTTTGGTTGTAAGTAATGGAA 266037 Query 205958 A 205958 | Sbjct 266036 A 266036 >seq4753 Length=121649 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/161 (72%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 ||||||||||||||||||| | |||||| || | | |||||||| | ||| | | Sbjct 90824 TTCAAGATAAAGAAGGTATCTCTTTTGATCAGCAGCGATTAATTTTTGCTGATAAAGAGT 90883 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGG 124746 | || ||| | | || || |||||| |||||| | |||||||| | || || |||| Sbjct 90884 TGGAAGATGGAAGGACTTTGTGAGATTACAATATTGAGAAAGAATCTATGTTACACTTGG 90943 Query 124747 TTTTACGTTTACGAGGTGGTATTAAAAATTCATAAAAATTG 124787 | || || || || ||||| | ||||| ||| || ||||| Sbjct 90944 TCTTTCGCTTGCGCGGTGG-AGCAAAAAATCACAAGAATTG 90983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754807695990400