Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq12019 120 5e-22 seq1189 91.5 2e-13 seq4753 86.0 9e-12 >seq12019 Length=383594 Score = 120 bits (132), Expect = 5e-22 Identities = 111/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| || || || || | |||||| || || || ||| || |||||||| ||||| Sbjct 131128 CCACCTCTCAGCCTCAAAACAAGATGTAATGTTGACTCCTTTTGA-ATATTATAGTCTGA 131186 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||||| ||| |||| || || |||||||||||||| || |||||||| || || Sbjct 131187 TAATGTTCTGCCATCTTCTAGCTGCTTACCAGCAAAAATCAACCTCTGCTGATCTGGTGG 131246 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| |||||||||||||| Sbjct 131247 AATACCTTCTTTATCTTG 131264 Score = 120 bits (132), Expect = 5e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | ||| || |||||||| | |||||| ||||| || || || || | Sbjct 131428 TTCCACCTCTTAATCTCAAAACCAAATGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAG 131487 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||||| | || ||| || | ||||| ||||||||||| | ||| |||||||| |||| Sbjct 131488 ACAGAGTACGGCCATCTTCAAGCTGTTTCCCAGCAAAAATAAGTCTCTGCTGATCTGGAG 131547 Query 146169 GAATTCCTTCTTTATCTTG 146187 | ||||||||||||||||| Sbjct 131548 GGATTCCTTCTTTATCTTG 131566 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||||||||| || || || || | ||||||||||| |||||||||||||| Sbjct 132570 CCTCCTCTAAGTCGCAAAACTAAGTGCAGGGTAGATTCTTTTTGAATATTATAATCTGAG 132629 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || || || ||||||||||| || | || |||||||| |||||| Sbjct 132630 AGTGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATAAGTCGCTGCTGATCAGGAGGA 132689 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| ||||| Sbjct 132690 ATTCCTTCTTTGTCTTG 132706 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | ||||| | || | ||| | ||||||||| || || |||||||| | Sbjct 125401 TTCCTCCACGGAGTCTCAGAACAAGATGCAGAGTAGATTCCTTCTGAATGTTATAATCAG 125460 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||| ||||||| ||| || | || || ||||||||||| | | ||||||||| |||| Sbjct 125461 AAAGGGTTCTGCCATCTTCAAGCTGCTTGCCAGCAAAAATAAGACGTTGCTGATCTGGAG 125520 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||||||||||||||| Sbjct 125521 GAATTCCTTCTTTATCTTG 125539 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || ||||| |||| || | ||| | ||||||||||| |||||||| |||||| Sbjct 131658 CCTCCCCTAAGCCTTAGGACTAGATGAAGGGTAGATTCTTTTTGAATATTATAGTCTGAA 131717 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| ||||||||||| |||||||| || | | |||||||| || ||| Sbjct 131718 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGA 131777 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||||||||| || Sbjct 131778 ATGCCTTCTTTATCCTG 131794 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||| |||||| || | ||| |||||||| ||||| || || || Sbjct 131886 CCTCCTCTCAACCTTAGTACCAAGTGCAGAGTCGATTCTTTCTGAATATTGTAGTCCGAT 131945 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| ||||| || || || ||||| || | ||||| ||||| |||||| Sbjct 131946 AAAGTACGTCCATCCTCTAACTGCTTCCCTGCAAATATAAGCCTTTGTTGATCAGGAGGA 132005 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||||||||| || Sbjct 132006 ATACCTTCTTTATCCTG 132022 >seq1189 Length=753237 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 || || || || ||||||||||| ||||| |||||||| | ||| || | ||| || Sbjct 67468 ACTAAGTGCAATGTAGATTCTTTCTGAATATTGTAATCTGACAAAGTCCTTCCATCTTCC 67409 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCT 146176 || ||||| |||||||||||||||| |||||||| ||||| || ||| Sbjct 67408 AACTGTTTACCAGCAAAAATCAATCGCTGCTGATCAGGAGGGATACCT 67361 >seq4753 Length=121649 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || ||||| ||||| |||||||||| ||||| |||||| | | ||| || | ||| Sbjct 90947 AAGACCAAGTGTAACATAGATTCTTTCTCAATATTGTAATCTCACAAAGTCCTTCCATCT 90888 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || || | ||| |||||||||| |||| |||||||| || || |||||||||||| Sbjct 90887 TCCAACTCTTTATCAGCAAAAATTAATCGCTGCTGATCAAAAGAGATACCTTCTTTATCT 90828 Query 146186 TG 146187 || Sbjct 90827 TG 90826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742888333525760