Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3821 116 3e-21 >seq3821 Length=102291 Score = 116 bits (128), Expect = 3e-21 Identities = 165/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 16249 ATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCC 16308 ||||| ||| | || | |||||| || || || ||||||||| || ||||||| || Sbjct 78305 ATGCATACCT-CATCTCGACTTATCAATTCATTGCTAAATGTAAGGCCAGGCATTAAACC 78363 Query 16309 TCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGC 16368 || || || | ||| ||||| | ||||||||||||||||||||||| ||||| || || Sbjct 78364 TCTCTTCTTCAGCCAGAATATGGATGCAAATGAACCAGAAAAGAATATTCCTTCTACAGC 78423 Query 16369 GGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagc 16428 ||||||||||| | ||| ||||| | | | || || | ||||| || ||| Sbjct 78424 AGCAAATGCAACGATTCGTTCACCAAAGGATGCATGCGTATGATTAATCCAATTCAAAGC 78483 Query 16429 ccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAA 16479 ||||| ||||| | || |||||| | | || || ||||| ||||| Sbjct 78484 CCAATCAGCTTTCTTCTTCACACAGGAAAGAGTTTCAATAGCATTGAATAA 78534 Score = 113 bits (124), Expect = 4e-20 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 16622 AAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAA 16681 || ||||| || || || ||||| || ||||||||||| || | |||||| |||||| Sbjct 84876 AAATTTTCATTCACAATGCCATCACTCGCTGCAAAAAATGCTAAAATGTGTGAAATAAAG 84935 Query 16682 tttttttCGTTAT-CTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTC 16740 | ||||| | || || |||| ||| || | |||||||||||| || || || Sbjct 84936 TGCTTTTCTTCGGGCTTTAACTTTTC-CCAATCTCCTAGATCTTTTGATAAGTCAACTTC 84994 Query 16741 TTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAAC 16800 ||| ||||||| || ||||| |||||||||||||||| | |||||| |||| || | Sbjct 84995 TTCAGCAGTCCAGAACGAAGCTTCAGCCTTTTTATACATCTGCCATATATCTTGATACTC 85054 Query 16801 AATAGGAAA 16809 ||| ||||| Sbjct 85055 AATGGGAAA 85063 Score = 102 bits (112), Expect = 8e-17 Identities = 158/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099 || || ||||| | ||||| | | ||| || || |||||||| || ||||||||||| Sbjct 77737 TTTTCACATCCTAGTTCCACTAGAAGTCTGTCAGCTACAAATTCAATGTACTGTTTCATC 77796 Query 16100 AAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCT 16159 || | | ||||||||||||||| |||||| | ||||||||| | ||| | || ||| Sbjct 77797 AACTTATTGTTCATTCCTATTAAAGCAACAGGCAATGCTTCTGTGAGAAATTCTTGTTCA 77856 Query 16160 ATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTA---AT 16216 ||| || || ||| || || | | ||| || ||| | || |||||| | Sbjct 77857 ATAGATACGGCATCAGATATAATTTGGGTAACT---CT-TTTTTCTGATGGTTTATTTAC 77912 Query 16217 AAG-TGTTTAAACATTATACAAGCAAAATCACAATGCAATCC 16257 ||| || | ||||||| || ||||||||||||||||| || Sbjct 77913 AAGATGACTGAACATTAGGCAGGCAAAATCACAATGCAAGCC 77954 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 16497 TATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTG 16556 ||||| ||| |||||||| || || ||||| |||||||||||||| | ||| || |||| Sbjct 82884 TATCTTTAATGTAAGTATCAATAAGCAAACTGTACATTTCTGAATGGACATTTTCAATTG 82943 Query 16557 CTATCTGAAAACCATAAAAGCATCTAGCTTC 16587 ||||||| |||||||| || || | ||||| Sbjct 82944 CTATCTGGAAACCATAGAAACAGCGGGCTTC 82974 Score = 82.4 bits (90), Expect = 7e-11 Identities = 82/104 (79%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 15923 TTATTTGACATAACTG-ACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGT 15981 || || ||||| ||| ||| |||| ||||||| | ||| | || ||||| || ||||| Sbjct 76428 TTTTTAGACATGACTCCACACTTTT-GATATTCTCCGACTTTTTTCTCAAAAAAGTTTGT 76486 Query 15982 TTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 ||| |||||||| ||||| |||||||||||||| ||||||| Sbjct 76487 TTTCCCTTCTAAGCTAATATGCTCCATAAAATCAAATGGATTTT 76530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462115089545800