Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3821 132 6e-26 seq15467 104 3e-17 >seq3821 Length=102291 Score = 132 bits (146), Expect = 6e-26 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 |||||||||||||| || |||||||| ||||||||||| || || | ||| ||||| Sbjct 84876 AAATTTTCATTCACAATGCCATCACTCGCTGCAAAAAATGCTAAAATGTGTGAAATAAAG 84935 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 34085 | ||||| || || ||| || | |||||| | |||||| |||| || |||||| Sbjct 84936 TGCTTTTCTTCGGGCTTTAACTTTTCCCAATCTCCTAGATCTTTTGATAAGTCAACTTCT 84995 Query 34086 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 34145 || | ||||| || || || || |||||||||||||| | ||| || || ||||| | Sbjct 84996 TCAGCAGTCCAGAACGAAGCTTCAGCCTTTTTATACATCTGCCATATATCTTGATACTCA 85055 Query 34146 ATTGGGAAAATAACAAATCTA 34166 || || || || ||||||||| Sbjct 85056 ATGGGAAATATTACAAATCTA 85076 Score = 120 bits (132), Expect = 4e-22 Identities = 160/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||| ||| || ||||| || ||| || || || ||||||| || | ||| | Sbjct 78312 CCTCATCTCGACTTATCAATTCATTGCTAAATGTAAGGCCAGGCATTAAACCTCTCTTCT 78371 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| |||||||| || ||||| || |||||||| ||||||||||| |||||||| | Sbjct 78372 TCAGCCAGAATATGGATGCAAATGAACCAGAAAAGAATATTCCTTCTACAGCAGCAAATG 78431 Query 33724 CAATAAGTCTCTCTCCATAACCGGC--GC-TGTCATGTATCCACTTTTGAGCCCAATCGG 33780 ||| | || || ||| | || || | | || ||||| || ||||||||| | Sbjct 78432 CAACGATTCGTTCACCAAAGGATGCATGCGTATGATTAATCCAATTCAAAGCCCAATCAG 78491 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 | ||||| || ||||| | | ||||| || ||||| || Sbjct 78492 CTTTCTTCTTCACACAGGAAAGAGTTTCAATAGCATTGAA 78531 >seq15467 Length=153806 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 64007 ACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAAT 64066 ||||||| |||||||| || || || |||||||||||||| || | || || || || Sbjct 143694 ACTAAATGACTTTTTTGTCTCTTTATGCAGATTTGATATGGCAATGCGTGCAGCAAGGAT 143753 Query 64067 GGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAA 64126 ||||||||| ||||||| |||||| ||| ||||| ||||| || |||| | || | Sbjct 143754 GGCATAATCAGGATGTTTTGTAGTCATAGTCGCTGCAATTTCTGCAGCCAAGTTATCAAG 143813 Query 64127 TTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 ||| || ||||| || ||| ||| | || | || || ||||| Sbjct 143814 TTCAACAGTTGTAACACCAGGATACAAGCCATTTATGACTTTCAT 143858 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 || |||||||| |||||||| |||| || ||||||||||| | |||||| ||| Sbjct 76390 ATTTCAGTGCATAGATTACTGCACTGTATGGTTCCTAAATTCTTTTGATTTGATTTTCGA 76449 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63116 ||||| ||||| ||||| | || |||| || || ||||||||||||||||| ||||| Sbjct 76450 TTACAAGCATCTTTATACAACATATATGGGGTTCCTGTTTCAATCTGAGATTCAATAATT 76509 Query 63117 GCTTTCCA 63124 || | ||| Sbjct 76510 GCATACCA 76517 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| || ||||| ||||| || || |||| ||| || | |||||| || || || || | Sbjct 63800 TACCTGAAATTCCCCAGATAAAACCCTCCTAGTATAGAAATTACTAGTGTATGGCTCTAT 63859 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || ||||||||||| | |||||| |||||||| || || |||||||| || || | || Sbjct 63860 AGATTCATTATTTCCAAGAATTTGCGCAGTTGAAGCTGTTGGCATAGGGGCTACAAGCAA 63919 Query 62507 ACTATTTCT 62515 ||| || || Sbjct 63920 ACTGTTCCT 63928 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 63179 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA-TCTAGGACATTCATCCGGAC 63237 ||||||| ||| || || || ||||| |||| || || || |||||| |||| Sbjct 76864 ATACAATTCTTCAAATTCCTCCCCCCAG-CATTCATGAAGTCCTGGTGATTCATTTGGAC 76922 Query 63238 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63297 |||| || |||| | |||| | | |||||||||||||| | ||| |||||||| | Sbjct 76923 ACATTAAACTCCACATTTCGTCCTTTTCTACTCGTTTCATAAATAAATCTGGAATCCACA 76982 Query 63298 GAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63357 || ||| |||||||| | || || || || || || |||||||| || | ||| | Sbjct 76983 ATGCATAAAACAGATCTCTGGCCCTCTGCTCTTCTTTGCCAGTATTCTTCTTTAAATCTA 77042 Query 63358 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63412 || | | || || | |||||| || || || || || || | | ||||||| Sbjct 77043 AAAAGTCAAATATGTCTGCATGCCAAGGCTCTAAATAAATTGCAAAAGCTCCAGG 77097 Score = 86.0 bits (94), Expect = 8e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 62114 CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATT 62173 |||||| ||||| ||||| || |||| ||| |||| | || || || || || | ||| Sbjct 55141 CCATCCATAAAAGTGCATGCTTGTTAATTTTCCATAATTTGGTTCAGCAATGTGAACATT 55200 Query 62174 CATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTT 62233 | ||| ||||||||||| || | || || || || ||||||||||||| ||| | || Sbjct 55201 TAGAGACTGACTTTGATCTATATAAGCACCTCTATCAGCAGCCATTTTTAAGATATTTTT 55260 Query 62234 TTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 || | || ||||||| || ||| | | ||| | ||| || |||| Sbjct 55261 CTGCGGTATCTCCCAAACTGTACGATATAATTTCTTGAGATCATCAGGAA 55310 Score = 84.2 bits (92), Expect = 3e-11 Identities = 80/100 (80%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 || ||||| || || ||| || |||||||| || |||||||| || ||||| |||||| Sbjct 102945 CCAATTCCTCCAGCAGATTTTGAAATTAATGCACAACGTTTTAAAGTATCATAAATGCCT 103004 Query 63606 TCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTA 63644 ||||| || || || ||| ||||||| |||||||||||| Sbjct 103005 TCTATACTGTCTTCAGTCATTGTTAAG-AGAAAACAGCTA 103043 Score = 82.4 bits (90), Expect = 1e-10 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 62826 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTG 62885 || || |||||||||||||| |||||||| ||||| || | |||| | || ||||| Sbjct 73674 TCAGGGATAGGATAATAATTGATATCTATTATTTTGTTTAAATTTTTTGTTATAACTTTC 73733 Query 62886 ACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTACAAACATGTTCAATGCA 62945 || | ||||||||| ||||||||| ||| | ||| | |||| | ||| Sbjct 73734 GTGACTTGCTTCAGTTTTGCAAAATCAAACTCTTGATCCTTGACATATCTGTTGAGAGCA 73793 Query 62946 ACAGATGCCAGATTACACACGGCTACCT 62973 | |||||||||||| ||||| || |||| Sbjct 73794 ATAGATGCCAGATTGCACACAGCAACCT 73821 Score = 82.4 bits (90), Expect = 1e-10 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| | ||| || | ||| ||||| || || |||||||| |||||||| | || || Sbjct 107176 AGTTCCAGAATTGAAGAGGGTTGGAGATGCATGAGTAAACCACTTTTCAGACAATAAATG 107235 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 || ||||||||||||| || || || ||| || || || || || ||||| | Sbjct 107236 ATATGTCTCAATAGCTGCATCAATGTCATCACCATGTATACCAACAGCAACTCGCATAAG 107295 Query 63782 CATGTGCTGAGGTCTTTCAACAA 63804 ||| || || |||| ||||||| Sbjct 107296 CATATGTTGCGGTCGCTCAACAA 107318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629277114153840