Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3821 138 1e-27 seq15467 114 1e-20 >seq3821 Length=102291 Score = 138 bits (152), Expect = 1e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 12014 AAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAG 12073 ||||| ||||| ||||| |||||||| | |||||||||||||| || ||| |||||| Sbjct 84876 AAATTTTCATTCACAATGCCATCACTCGCTGCAAAAAATGCTAAAATGTGTGAAATAAAG 84935 Query 12074 TATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCT 12133 | ||||| || |||| || |||||||| ||| |||||||||||| || |||||| Sbjct 84936 TGCTTTTCTTCGGGCTTTAACTTTTCCCAATCTCCTAGATCTTTTGATAAGTCAACTTCT 84995 Query 12134 TCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTA 12193 ||| | ||||| || || | | | ||||||||| | ||| ||||| ||||||| | Sbjct 84996 TCAGCAGTCCAGAACGAAGCTTCAGCCTTTTTATACATCTGCCATATATCTTGATACTCA 85055 Query 12194 ATAGGGAAAATAACGAACCTA 12214 || || || || || || ||| Sbjct 85056 ATGGGAAATATTACAAATCTA 85076 Score = 122 bits (134), Expect = 8e-23 Identities = 170/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 11644 ATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCC 11703 ||| | |||| | |||| |||||| | |||||| |||||| | || ||||| || || Sbjct 78305 ATGCATACCT-CATCTCGACTTATCAATTCATTGCTAAATGTAAGGCCAGGCATTAAACC 78363 Query 11704 TCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGC 11763 || || || | ||| ||||| | |||||||||||||||||||||||||| || ||||| Sbjct 78364 TCTCTTCTTCAGCCAGAATATGGATGCAAATGAACCAGAAAAGAATATTCCTTCTACAGC 78423 Query 11764 TGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGC-TA-GAT--ATCCATTTTCTGG 11819 |||||||| || | || ||| ||| | | ||| || ||| ||||| || | Sbjct 78424 AGCAAATGCAACGATTCGTTCACCA-AAGGATGCATGCGTATGATTAATCCAATTCAAAG 78482 Query 11820 CCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871 |||||||||||||||| || || || | ||||| ||||| || ||||| Sbjct 78483 CCCAATCAGCTTTCTTCTTCACACAGGAAAGAGTTTCAATAGCATTGAATAA 78534 >seq15467 Length=153806 Score = 114 bits (126), Expect = 1e-20 Identities = 171/239 (72%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 37929 ATATAATTTGTTAAAATCATTCCCCCATACATCGCATAA--TCCTGGACATTCGCATGGA 37986 ||| |||| | ||| || | |||||| ||| ||| | |||||| |||| |||| Sbjct 76864 ATACAATTCTTCAAATTCCTCCCCCCAG-CATT-CATGAAGTCCTGGTGATTCATTTGGA 76921 Query 37987 CACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCAT 38046 ||||||| | ||| ||| || |||||||| |||| |||||||||||| || | ||| Sbjct 76922 CACATTAAACTCCACATTTCGTCCTTTTCTACTCGTTTCATAAATAAATCTGGAATCCAC 76981 Query 38047 AATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTT 38106 |||||| ||| | |||| ||| || | ||||| || || |||||| |||| | Sbjct 76982 AATGCATAAAACAGATCTCTGGCCCTCTGCTCTTCTTTGCCAGTATTCTTCTTTAAATCT 77041 Query 38107 AGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCT 38165 | ||| || ||||| || || ||||| || |||| |||||| | | ||||| ||||| Sbjct 77042 AAAAAGTCAAATATGTCTGCATGCCAAGGCTCTAAATAAATTGCAAAAGCTCCAGGTCT 77100 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 36864 CCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGT 36923 |||||| ||||| ||||| || || | |||| | || | || | | | || | | | Sbjct 55141 CCATCCATAAAAGTGCATGCTTGTTAATTTTCCATAATTTGGTTCAGCAATGTGAACATT 55200 Query 36924 CATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTT 36983 | || ||||||||||||||| | |||||||| || || ||||||| ||| ||| ||| Sbjct 55201 TAGAGACTGACTTTGATCTATATAAGCACCTCTATCAGCAGCCATTTTTAAGATATTTTT 55260 Query 36984 TTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGG 37031 || | |||||||||||| || ||||| || || | || ||| || Sbjct 55261 CTGCGGTATCTCCCAAACTGTACGATATAATTTCTTGAGATCATCAGG 55308 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 38409 TGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATA 38468 ||||||||| | || || | || ||||||||||| | ||||| ||||| ||||| | Sbjct 107173 TGGAGTTCCAGAATTGAAGAGGGTTGGAGATGCATGAGTAAACCACTTTTCAGACAATAA 107232 Query 38469 ATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCAT 38528 || |||||| || || | |||| || ||| | || || ||||| | || || | ||| Sbjct 107233 ATGATATGTCTCAATAGCTGCATCAATGTCATCACCATGTATACCAACAGCAACTCGCAT 107292 Query 38529 TAGCATATGTTGTGGTC 38545 ||||||||||| |||| Sbjct 107293 AAGCATATGTTGCGGTC 107309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468122729586320