Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq12019 131 2e-25 seq12235 86.0 6e-12 >seq12019 Length=383594 Score = 131 bits (144), Expect = 2e-25 Identities = 159/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG--TCTT 139613 |||| |||| ||||| ||||||||||| ||||| || | | | | ||| |||| Sbjct 131676 ACTAGATGAAGGGTAGATTCTTTTTGAATATTATAGTC--TGAAAGAGTACGACCATCTT 131733 Query 139614 CGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 139673 | | |||||||||||| |||| ||||| |||||||| || || ||||||||||| || Sbjct 131734 CTAATTGTTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGAATGCCTTCTTTATCCT 131793 Query 139674 TGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 ||||||| ||| | | ||| | ||||| ||||||| ||||| | || | |||| Sbjct 131794 GGATTTTTGCTTTCACGTTTTCAATGGTGTCACTGGGCTCTACCTCTAACGTAATGGTCT 131853 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||| || | |||||||| || ||||||||| || Sbjct 131854 TGCCAGTAAGAGTTTTTACAAAAATTTGCATACCT 131888 Score = 131 bits (144), Expect = 2e-25 Identities = 163/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGA 139608 |||||||||||||| | ||||| ||||||||||| |||||||| | ||| | || | Sbjct 132582 CGCAAAACTAAGTGCAGGGTAGATTCTTTTTGAATATTATAATCTGAGAGTGTACGTCCA 132641 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| | ||| || |||||| |||| || || |||||||| ||||| || |||||||| Sbjct 132642 -TCTTCCAACTGCTTTCCAGCAAAGATAAGTCGCTGCTGATCAGGAGGAATTCCTTCTTT 132700 Query 139669 GTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 ||| ||| |||| | ||||| | ||| | ||| || |||| || ||||| | || | Sbjct 132701 GTC-TTGAATTTTAGCTTTTACATTTTCAATTGTATCACTGGGTTCTACCTCCAAAGTGA 132759 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || || |||| || || || ||||| |||||| Sbjct 132760 TGGTTTTTCCAGTCAGAGTCTTCACAAATATCTGCATA 132797 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | |||||| || |||| |||||||||||||||||||| || || | Sbjct 131430 CCACCTCTTAATCTCAAAACCAAATGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAC 131489 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| |||||||| |||||| | || || | |||||||| ||||| Sbjct 131490 AGAGTACGGCCATCTTCAAGCTGTTTCCCAGCAAAAATAAGTCTCTGCTGATCTGGAGGG 131549 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || |||||||| || ||||||| ||||| | ||| | ||||| | ||||| || Sbjct 131550 ATTCCTTCTTTATCTTGGATTTTTGCTTTTACATTTTCGATGGTGTCACTAGGCTCAACT 131609 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | ||| || || || | ||||| || || || |||||| || Sbjct 131610 TCTAATGTAATCGTTTTTCCTGTAAGAGTTTTCACAAAAATCTGCATACCT 131660 Score = 105 bits (116), Expect = 7e-18 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||||||||| ||||||||||| | ||| | || | ||||| | ||| ||||| Sbjct 132372 GTTGACTCTTTTTGGATGTTATAATCAGATAATGTACGTCCA-TCTTCCAACTGCTTACC 132430 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| | || || | |||||||||||| || ||||| || ||||| ||||||| ||| Sbjct 132431 AGCAAATATAAGCCTTTGCTGATCGGGTGGAATGCCCTCCTTGTCTTGGATTTTTGCTTT 132490 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | ||| | ||| || ||||||| || || | || | || || || || | || Sbjct 132491 GACATTTTCTATTGTATCACTGGGCTCAACTTCTAATGTTATGGTTTTTCCAGTAAGAGT 132550 Query 139747 TTTTACGAATATTTGCATAGCT 139768 ||| || || || |||||| || Sbjct 132551 TTTAACAAAGATCTGCATACCT 132572 Score = 100 bits (110), Expect = 3e-16 Identities = 134/185 (72%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| || || |||||||||||||| | || || ||||| ||||| || ||| Sbjct 125433 GTAGATTCCTTCTGAATGTTATAATCAGAAAGGGTTCTGCCATCTTCAAGCTGCTTGCCA 125492 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | || |||||||||||||| ||||| || |||||||| || ||||||| || Sbjct 125493 GCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTATCTTGGATTTTTGCCTTC 125552 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | |||||| | || ||||| |||| || | |||||| || | ||| | Sbjct 125553 ACATTTTCTATTGTGTCACTTGGTTCCACTTCAAGAGTTATCGTCTTACCTG-CAAATAT 125611 Query 139748 TTTAC 139752 ||||| Sbjct 125612 TTTAC 125616 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | | ||| |||| || | ||||| ||||| ||||||||||| || Sbjct 132114 CCTCCTCGAAGCCTCAACACTAGATGCAGAGTAGATTCTTTCTGAATGTTATAGTCTGAT 132173 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | | ||||| | ||| ||||||||| | || || | || ||||| || || Sbjct 132174 AATGTACGCCCATCTTCCAACTGCTTACCAGCAAATATGAGCCTCTGTTGATCAGGTGGG 132233 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| || || |||||| ||| | | ||| | |||||| |||| || || Sbjct 132234 ATGCCTTCCTTATCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCACTGGGTTCAACT 132293 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | ||||| || || | ||||| || || || |||||| || Sbjct 132294 TCCAATGTAATGGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCATACCT 132344 >seq12235 Length=595988 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/128 (76%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||||||||| ||||||||||| |||||||| || ||||| || |||| || Sbjct 179202 CCACCACGTAAACGCAGAACTAAGTGAAGTGTAGACTCCTTCTGAATATTGTAAT--CTG 179259 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || || ||| ||||| | ||| || |||||| | || || || |||||||| |||| Sbjct 179260 ATAATGTACGACCATCTTCCAACTGCTTTCCAGCAAAAATAAGTCGCTGCTGATCAGGAG 179319 Query 139656 GTATGCCT 139663 | || ||| Sbjct 179320 GAATACCT 179327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495638296477600