Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq12019 127 2e-24 >seq12019 Length=383594 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||||||||||| || | |||||||||||||| || || ||||| Sbjct 132570 CCTCCTCTAAGTCGCAAAACTAAGTGCAGGGTAGATTCTTTTTGAATATTATAATCTGAG 132629 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || | ||||| | || || |||||| |||| || || |||||||| ||||| Sbjct 132630 AGTGTACGTCCA-TCTTCCAACTGCTTTCCAGCAAAGATAAGTCGCTGCTGATCAGGAGG 132688 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| |||||| ||||| | ||| | || || |||||||||| Sbjct 132689 AATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATTGTATCACTGGGTTCTAC 132748 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || |||| || || || ||||| |||||| Sbjct 132749 CTCCAAAGTGATGGTTTTTCCAGTCAGAGTCTTCACAAATATCTGCATA 132797 Score = 125 bits (138), Expect = 7e-24 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG--TCTT 143033 |||| ||||| |||||||||||||| || || || || | | | | ||| |||| Sbjct 131676 ACTAGATGAAGGGTAGATTCTTTTTGAATATTATAGTC--TGAAAGAGTACGACCATCTT 131733 Query 143034 CGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 143093 | | ||||||||||||| |||| ||||| |||||||| || || ||||||||||| || Sbjct 131734 CTAATTGTTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGAATGCCTTCTTTATCCT 131793 Query 143094 TAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCT 143153 |||||| ||| | | ||| | ||||| |||| ||||| || | || | |||| Sbjct 131794 GGATTTTTGCTTTCACGTTTTCAATGGTGTCACTGGGCTCTACCTCTAACGTAATGGTCT 131853 Query 143154 TGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| || | |||||||| || ||||||||| || Sbjct 131854 TGCCAGTAAGAGTTTTTACAAAAATTTGCATACCT 131888 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | | || ||| | ||| | |||||||| || || ||||| ||||| Sbjct 125403 CCTCCACGGAGTCTCAGAACAAGATGCAGAGTAGATTCCTTCTGAATGTTATAATCAGAA 125462 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| || || || |||||| | || |||||||||||||| ||||| Sbjct 125463 AGGGTTCTGCCATCTTCAAGCTGCTTGCCAGCAAAAATAAGACGTTGCTGATCTGGAGGA 125522 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || |||||| || | | ||| | ||||| | ||||| ||| Sbjct 125523 ATTCCTTCTTTATCTTGGATTTTTGCCTTCACATTTTCTATTGTGTCACTTGGTTCCACT 125582 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTT 143169 |||| ||| | |||||| || | ||| |||| Sbjct 125583 TCAAGAGTTATCGTCTTACCTGCAAATATTTT 125614 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | | ||| |||| ||| | ||||||||||| || ||||| || || Sbjct 132114 CCTCCTCGAAGCCTCAACACTAGATGCAGAGTAGATTCTTTCTGAATGTTATAGTCTGAT 132173 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | | ||||| | || ||||||||| | || || | || ||||| || || Sbjct 132174 AATGTACGCCCATCTTCCAACTGCTTACCAGCAAATATGAGCCTCTGTTGATCAGGTGGG 132233 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| || || ||||| ||| | | ||| | ||||| ||||||| ||| Sbjct 132234 ATGCCTTCCTTATCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCACTGGGTTCAACT 132293 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | ||||| || || | ||||| || || || |||||| || Sbjct 132294 TCCAATGTAATGGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCATACCT 132344 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | | | ||| | ||| | ||| || |||||||| ||||| ||||| Sbjct 132342 CCTCCTCGAAGCCTTAGAACAAGATGCAATGTTGACTCTTTTTGGATGTTATAATCAGAT 132401 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || | ||||| | || ||||||||| | || || | |||||||||||| || Sbjct 132402 AATGTACGTCCA-TCTTCCAACTGCTTACCAGCAAATATAAGCCTTTGCTGATCGGGTGG 132460 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| |||||| ||| | | ||| | || || |||| || || Sbjct 132461 AATGCCCTCCTTGTCTTGGATTTTTGCTTTGACATTTTCTATTGTATCACTGGGCTCAAC 132520 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||| | || | || || || || | ||||| || || || |||||| || Sbjct 132521 TTCTAATGTTATGGTTTTTCCAGTAAGAGTTTTAACAAAGATCTGCATACCT 132572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506579299254960