Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq12019 226 7e-54 seq3821 109 1e-18 seq16427 104 5e-17 seq1189 98.7 2e-15 seq8969 95.1 3e-14 seq12235 87.8 4e-12 >seq12019 Length=383594 Score = 226 bits (250), Expect = 7e-54 Identities = 188/230 (82%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || ||||| || |||||||| | ||||||||||| |||||||||||||| Sbjct 131655 ATACCTCCCCTAAGCCTTAGGACTAGATGAAGGGTAGATTCTTTTTGAATATTATAGTCT 131714 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| ||||||| |||||| |||||||| || || | ||| |||||||| Sbjct 131715 GAAAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGCTGCTGATCAGGT 131774 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||||||||| || |||||||| || ||||| | ||| || || || ||| Sbjct 131775 GGAATGCCTTCTTTATCCTGGATTTTTGCTTTCACGTTTTCAATGGTGTCACTGGGCTCT 131834 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||| ||||| ||||| |||||||| ||||||||||| || ||||| Sbjct 131835 ACCTCTAACGTAATGGTCTTGCCAGTAAGAGTTTTTACAAAAATTTGCAT 131884 Score = 215 bits (238), Expect = 1e-50 Identities = 188/234 (80%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | || ||| || |||| ||| | || ||||| |||||||| ||||| ||| Sbjct 132795 ATACCACCACGTAACCTGAGGACTAAATGAAGAGTGGATTCCTTCTGAATGTTATAATCA 132854 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||| ||| ||||||| ||| ||||| ||||| |||||||||||||| |||||| Sbjct 132855 GACAAGGTTCGACCATCTTCTAATTGCTTTCCTGCAAATATTAGCCTCTGTTGGTCAGGA 132914 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || || || ||||| |||||||||||||| | |||||| || || || Sbjct 132915 GGAATTCCTTCCTTGTCTTGGATCTTAGCTTTTACATTTTCAATGGTATCACTTGGCTCC 132974 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| | || || || || |||||||||||||| ||||| |||||||||||| Sbjct 132975 ACCTCCAAAGTGATGGTTTTTCCAGTAAGTGTTTTCACAAAGATCTGCATTTTG 133028 Score = 208 bits (230), Expect = 2e-48 Identities = 184/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||||| || | || | ||| | ||||| ||||| ||||| || |||||| Sbjct 131427 ATTCCACCTCTTAATCTCAAAACCAAATGAAGAGTAGACTCTTTTTGAATGTTGTAGTCA 131486 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || ||||| ||||||||||| || ||||| ||||| ||| Sbjct 131487 GACAGAGTACGGCCATCTTCAAGCTGTTTCCCAGCAAAAATAAGTCTCTGCTGATCTGGA 131546 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||||||||| || || ||||||||||||||||| | ||| || ||||| || Sbjct 131547 GGGATTCCTTCTTTATCTTGGATTTTTGCTTTTACATTTTCGATGGTGTCACTAGGCTCA 131606 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| |||||| || || || ||||| ||||| ||||| |||||||| Sbjct 131607 ACTTCTAATGTAATCGTTTTTCCTGTAAGAGTTTTCACAAAAATCTGCAT 131656 Score = 203 bits (224), Expect = 7e-47 Identities = 183/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | ||| ||||| | || | || ||||||||||||||||| ||||| Sbjct 131883 ATACCTCCTCTCAACCTTAGTACCAAGTGCAGAGTCGATTCTTTCTGAATATTGTAGTCC 131942 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||| | || || |||| || || || ||||| || ||||| |||||||||||| Sbjct 131943 GATAAAGTACGTCCATCCTCTAACTGCTTCCCTGCAAATATAAGCCTTTGTTGATCAGGA 132002 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||||||||| || || ||||| |||||||||| ||||| ||||| || Sbjct 132003 GGAATACCTTCTTTATCCTGGATTTTAGCTTTAACATTTTCTATTGTATCACTAGGCTCA 132062 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| || ||||| ||||||||||| ||||| ||||| |||||||| Sbjct 132063 ACTTCTAAAGTGATAGTTTTACCAGTAAGAGTTTTAACAAAAATCTGCAT 132112 Score = 194 bits (214), Expect = 4e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| ||||| | |||||||| | ||||||||||||||||| |||||||| Sbjct 132111 ATCCCTCCTCGAAGCCTCAACACTAGATGCAGAGTAGATTCTTTCTGAATGTTATAGTCT 132170 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || | || ||||| | || || |||||||| || ||||||||||||||||| Sbjct 132171 GATAATGTACGCCCATCTTCCAACTGCTTACCAGCAAATATGAGCCTCTGTTGATCAGGT 132230 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || || || ||||| |||||||| | || || || ||||| Sbjct 132231 GGGATGCCTTCCTTATCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCACTGGGTTCA 132290 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | |||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 132291 ACTTCCAATGTAATGGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 132340 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | | |||| || | ||||||||||| ||||||||||| || Sbjct 132567 ATACCTCCTCTAAGTCGCAAAACTAAGTGCAGGGTAGATTCTTTTTGAATATTATAATCT 132626 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| | || ||||||||||| || || | ||| ||||||||| Sbjct 132627 GAGAGTGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATAAGTCGCTGCTGATCAGGA 132686 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| || ||||| || |||||||||||||| | ||||| || |||||| Sbjct 132687 GGAATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATTGTATCACTGGGTTCT 132746 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || || || ||||| || || || |||||||||||||| Sbjct 132747 ACCTCCAAAGTGATGGTTTTTCCAGTCAGAGTCTTCACAAATATCTGCAT 132796 Score = 176 bits (194), Expect = 1e-38 Identities = 165/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| ||||| | || ||||||||||| || || || |||||||||||||| Sbjct 131125 ATGCCACCTCTCAGCCTCAAAACAAGATGTAATGTTGACTCCTTTTGAATATTATAGTCT 131184 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||| || |||||||| || || ||||||||||| | |||||| ||||| || Sbjct 131185 GATAATGTTCTGCCATCTTCTAGCTGCTTACCAGCAAAAATCAACCTCTGCTGATCTGGT 131244 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| || || |||||||| |||||||| | ||||| || || || Sbjct 131245 GGAATACCTTCTTTATCTTGTATTTTTGCTTTAACATTTTCAATAGTATCACTGGGCTCG 131304 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || | || ||||| ||||| | |||| Sbjct 131305 ACTTCCAACGTTATAGTTTTACCTGCAAGT 131334 Score = 165 bits (182), Expect = 2e-35 Identities = 165/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || | || || || || ||||| | |||||||| |||||||| ||||| |||| Sbjct 125401 TTCCTCCACGGAGTCTCAGAACAAGATGCAGAGTAGATTCCTTCTGAATGTTATAATCAG 125460 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | || ||||| || ||||| || || || ||||||||||| || | || ||||| |||| Sbjct 125461 AAAGGGTTCTGCCATCTTCAAGCTGCTTGCCAGCAAAAATAAGACGTTGCTGATCTGGAG 125520 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | |||||||||||||| || || ||||| || |||||||||| || || || ||||| | Sbjct 125521 GAATTCCTTCTTTATCTTGGATTTTTGCCTTCACATTTTCTATTGTGTCACTTGGTTCCA 125580 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTT 104544 | || || || || |||||||| | || | |||| Sbjct 125581 CTTCAAGAGTTATCGTCTTACCTGCAAATATTTT 125614 >seq3821 Length=102291 Score = 109 bits (120), Expect = 1e-18 Identities = 137/186 (74%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 269068 CTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATA-GCGCGCCT--TA 269124 |||||||| || ||| |||| |||||| |||| ||||| || ||| || || | | Sbjct 78508 CTGTGTGAAGAAGAAAGCTGATTGGGCTTTGAATTGGATTAATCATACGCATGCATCCTT 78449 Query 269125 CGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGC 269184 || ||| | | ||||| ||||| ||||||||||| ||||||||||| || || ||||| Sbjct 78448 TGGTGAACGAATCGTTGCATTTGCTGCTGTAGAAGGAATATTCTTTTCTGGTTCATTTGC 78389 Query 269185 CGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATT 269244 | || || ||| ||||||| ||||| | ||||| || | || || || ||||| Sbjct 78388 ATCCATATTCTGGCTGAAGAAGAGAGGTTTAATGCCTGGCCTTACATTTAGCAATGAATT 78329 Query 269245 GATAAG 269250 |||||| Sbjct 78328 GATAAG 78323 Score = 102 bits (112), Expect = 2e-16 Identities = 108/141 (77%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969 ||| ||||||| || ||| || |||||||| | ||||| || || ||||||||||| || Sbjct 82998 TTCAGTCAAGAAGTGCAGGTTACTGAAGCCCGCTGTTTCTATGGTTTCCAGATAGCAATT 82939 Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAAC 269029 |||||| | |||||||| ||||||||| | | || |||||||| || | ||||| | | Sbjct 82938 GAAAATGTCCATTCAGAAATGTACAGTTTGCTTATTGATACTTACATTAAAGATAA-ATC 82880 Query 269030 GAAAAGAAAAGACTATTTTCT 269050 |||| ||| ||||| || Sbjct 82879 AGAAAGGTAAGTATATTTGCT 82859 >seq16427 Length=816503 Score = 104 bits (114), Expect = 5e-17 Identities = 108/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 238765 TAGGTTGTATGTGGTCAATATGTGGATTACACGAT-AGGGCATGGTCTGAGAGACCTATA 238823 |||||||||||||||| |||||||| | || ||| ||||| ||| |||| | || | Sbjct 434673 TAGGTTGTATGTGGTCTATATGTGGCATCCATGATCAGGGC-TGGGCTGAACGTGCTGTT 434615 Query 238824 TTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGTAAATGCT 238883 ||||||||| | |||| ||||| | | |||| | | | ||||||||||||||||| Sbjct 434614 TTTGGAAAAATACGATATATGAACTTTAAAGGCTGTCAAAGAAAATTTGATGTAAATGAG 434555 Query 238884 TTTATCAGTAAATACAGAG 238902 || ||||| |||||||||| Sbjct 434554 TTCATCAGAAAATACAGAG 434536 >seq1189 Length=753237 Score = 98.7 bits (108), Expect = 2e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| |||| || ||||||||||||||||||||||| || || || | ||| || || || Sbjct 67472 AAGGACTAAGTGCAATGTAGATTCTTTCTGAATATTGTAATCTGACAAAGTCCTTCCATC 67413 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 ||| | ||||| ||||||||||| | | ||| ||||||||||| || ||| Sbjct 67412 TTCCAACTGTTTACCAGCAAAAATCAATCGCTGCTGATCAGGAGGGATACCT 67361 >seq8969 Length=258277 Score = 95.1 bits (104), Expect = 3e-14 Identities = 124/170 (73%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 78479 ATTACTAGAGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATC 78538 ||| ||| |||||||||||||||||| |||| || | |||||| | || ||| | Sbjct 232748 ATTGCTAAAGCATTATGGTGGTATTACTTCTCAAAGCTACTAGAATTCTGTGACACTTTA 232807 Query 78539 TTCTTCATCCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTT 78598 || || || || || |||||| ||||||| ||| ||||| ||| |||| ||||||| Sbjct 232808 TTTTTTATTCTCCGGAAGAAAAATAATCAACTTACATTTCTTCATATATACCATCATTCC 232867 Query 78599 ACTATGTTT--ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGA 78646 || |||||| ||| ||| ||||| || | || ||| | | |||||| Sbjct 232868 ACAATGTTTGGACTATGG--TGGATTGGAGTGAAGTGGGTTCCTGGAGGA 232915 >seq12235 Length=595988 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||| || | |||||| || ||||||||||| || || |||| || | ||| ||| Sbjct 179217 AGAACTAAGTGAAGTGTAGACTCCTTCTGAATATTGTAATCTGATAATGTACGACCATCT 179276 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 || | || |||||||||||||| || | ||| ||||||||||| || ||| Sbjct 179277 TCCAACTGCTTTCCAGCAAAAATAAGTCGCTGCTGATCAGGAGGAATACCT 179327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150385610897324