Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq8110 100 1e-16 seq5812 98.7 5e-16 seq12479 96.9 2e-15 seq11914 96.9 2e-15 seq8692 96.9 2e-15 seq3852 95.1 6e-15 seq4472 91.5 8e-14 seq2070 87.8 9e-13 seq21618 86.0 3e-12 seq4305 82.4 4e-11 >seq8110 Length=567256 Score = 100 bits (110), Expect = 1e-16 Identities = 70/79 (89%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 235418 TGGCCCGTGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 235477 Query 11516 TGAGCTAATGGGCCGTCGA 11534 |||||||| ||||| |||| Sbjct 235478 TGAGCTAACGGGCC-TCGA 235495 Score = 96.9 bits (106), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| || |||||||||| |||||||||||||||||||||||| |||| |||||| Sbjct 233260 TGGCCCGTGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACACTCTAACCAAC 233201 Query 11516 TGAGCTAATGGGCCGTCGA 11534 |||||||| ||||| |||| Sbjct 233200 TGAGCTAACGGGCC-TCGA 233183 >seq5812 Length=1285597 Score = 98.7 bits (108), Expect = 5e-16 Identities = 78/92 (85%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| |||| |||||| || |||||||||| ||||||||||||||||||||||| Sbjct 1153501 AAAAACGTAAATATGGCCCGTGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGA 1153560 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 | |||| |||||||||||||| ||||| |||| Sbjct 1153561 CACTCTAACCAACTGAGCTAACGGGCC-TCGA 1153591 >seq12479 Length=1636609 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| || |||||||||| |||||||||||||||||||||||| |||| ||||| Sbjct 1106980 TTGGCCCGTG---GGATCGAACCCACGACCTTCGCGTTATTAGCACGACACTCTAACCAA 1106924 Query 11515 CTGAGCTAATGGGCCG 11530 ||||||||| |||||| Sbjct 1106923 CTGAGCTAACGGGCCG 1106908 Score = 96.9 bits (106), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| || |||||||||| |||||||||||||||||||||||| |||| |||||| Sbjct 1109501 TGGCCCGTGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACACTCTAACCAAC 1109442 Query 11516 TGAGCTAATGGGCCGTCGA 11534 |||||||| ||||| |||| Sbjct 1109441 TGAGCTAACGGGCC-TCGA 1109424 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| || |||||||||| |||||||||||||||||||||||| |||| |||||| Sbjct 1053794 TGGCCCGTGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACACTCTAACCAAC 1053853 Query 11516 TGAGCTAATGGGCC 11529 |||||||| ||||| Sbjct 1053854 TGAGCTAACGGGCC 1053867 Score = 82.4 bits (90), Expect = 4e-11 Identities = 73/91 (80%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||||| | | |||||||| | |||||||| |||||| ||| |||| || Sbjct 1092884 TTAAAAAAAAATTTACT-GGCCCATGGGGGCATCGAACCCCCGACCTCCGCATTATCGGC 1092826 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||| |||||||||||||| ||||| Sbjct 1092825 ACGGCGCTCTAACCAACTGAGCTAACGGGCC 1092795 >seq11914 Length=236304 Score = 96.9 bits (106), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| || |||||||||| |||||||||||||||||||||||| |||| |||||| Sbjct 208698 TGGCCCGTGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACACTCTAACCAAC 208757 Query 11516 TGAGCTAATGGGCCGTCGA 11534 |||||||| ||||| |||| Sbjct 208758 TGAGCTAACGGGCC-TCGA 208775 >seq8692 Length=4549800 Score = 96.9 bits (106), Expect = 2e-15 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| ||||| ||||| |||||||| |||||||||| ||||||||||||||||| Sbjct 4426373 AATTAAGTAAAAAGCAAAT-GGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTA 4426315 Query 11497 GCACGACGCTCTRACCAACTGA 11518 ||||||| |||| ||||||||| Sbjct 4426314 GCACGACACTCTAACCAACTGA 4426293 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||| | |||||||||| ||||||||||| |||| |||||| |||| |||||| Sbjct 4424622 TGGCCCACGGGCGGATCGAACCCACGACCTTCGCGATATTGGCACGATACTCTAACCAAC 4424563 Query 11516 TGAGCTAATGGGCCG 11530 |||||| |||||||| Sbjct 4424562 TGAGCTCATGGGCCG 4424548 >seq3852 Length=430702 Score = 95.1 bits (104), Expect = 6e-15 Identities = 66/75 (88%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 35570 AAAAAA--AAATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAC 35627 Query 11504 GCTCTRACCAACTGA 11518 |||| ||||||||| Sbjct 35628 ACTCTAACCAACTGA 35642 >seq4472 Length=128392 Score = 91.5 bits (100), Expect = 8e-14 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 ||||||||||||| | |||||||| ||||||||||||||||||| ||| ||| | ||| Sbjct 91348 AATTGGCCCATGAGGGAATCGAACCCACGACCTTCGCGTTATTAGCTCGATGCTGTAACC 91407 Query 11513 AACTGAGCTAATGGGCC 11529 || |||||||| ||||| Sbjct 91408 AAATGAGCTAACGGGCC 91424 >seq2070 Length=138363 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||||||||||||||||||||||| |||| ||||||||| |||| ||| Sbjct 117368 GGATCGAACCCACGACCTTCGCGTTATTAGCACGACACTCTAACCAACTGATCTAACGGG 117427 Query 11528 CC 11529 || Sbjct 117428 CC 117429 >seq21618 Length=33925 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 31577 AAAAAAAAACATGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACA 31636 Query 11505 CTCTRACCAACTGA 11518 |||| ||||||||| Sbjct 31637 CTCTAACCAACTGA 31650 >seq4305 Length=642146 Score = 82.4 bits (90), Expect = 4e-11 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | |||||||| |||||| ||| |||| |||||||||||| ||| Sbjct 384899 AACTGGCCCATGGGGGCATCGAACCCCCGACCTCCGCATTATCGGCACGACGCTCTAACC 384958 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||| ||||| Sbjct 384959 AACTGAGCTAACGGGCC 384975 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261272408106628