Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3821 127 3e-24 seq15467 100 4e-16 >seq3821 Length=102291 Score = 127 bits (140), Expect = 3e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||||||||||||||| || || ||||| ||||||||||| || || | ||| |||| Sbjct 84874 CCAAATTTTCATTCACAATGCCATCACTCGCTGCAAAAAATGCTAAAATGTGTGAAATAA 84933 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTT 33805 | | ||||| || || ||| || | |||||| | |||||| |||| || |||| Sbjct 84934 AGTGCTTTTCTTCGGGCTTTAACTTTTCCCAATCTCCTAGATCTTTTGATAAGTCAACTT 84993 Query 33806 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATT 33865 |||| | ||||| || || || || |||||||||||||| | ||| || || | ||| | Sbjct 84994 CTTCAGCAGTCCAGAACGAAGCTTCAGCCTTTTTATACATCTGCCATATATCTTGATACT 85053 Query 33866 GGATTGGGAAAATAACAAATCTA 33888 || || || || ||||||||| Sbjct 85054 CAATGGGAAATATTACAAATCTA 85076 Score = 125 bits (138), Expect = 9e-24 Identities = 161/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||| ||| || | ||| ||| ||| || || || ||||||| || | ||| | Sbjct 78312 CCTCATCTCGACTTATCAATTCATTGCTAAATGTAAGGCCAGGCATTAAACCTCTCTTCT 78371 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| |||||||| || ||||| ||||||||||| ||||||||||| |||||||| | Sbjct 78372 TCAGCCAGAATATGGATGCAAATGAACCAGAAAAGAATATTCCTTCTACAGCAGCAAATG 78431 Query 33446 CAATAAGTCTCTCTCCATAACCGGC--GC-TGTCATGTATCCACTTTTGAGCCCAATCGG 33502 ||| | || || ||| | || || | | || ||||| || ||||||||| | Sbjct 78432 CAACGATTCGTTCACCAAAGGATGCATGCGTATGATTAATCCAATTCAAAGCCCAATCAG 78491 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33542 | ||||| || ||||| | | ||||| || ||||| || Sbjct 78492 CTTTCTTCTTCACACAGGAAAGAGTTTCAATAGCATTGAA 78531 >seq15467 Length=153806 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 62946 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63005 || |||||||| |||||||| |||| || ||||||||||| | |||||| ||| Sbjct 76390 ATTTCAGTGCATAGATTACTGCACTGTATGGTTCCTAAATTCTTTTGATTTGATTTTCGA 76449 Query 63006 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63065 ||||| ||||| ||||| | || |||| || || ||||||||||||||||| ||||| Sbjct 76450 TTACAAGCATCTTTATACAACATATATGGGGTTCCTGTTTCAATCTGAGATTCAATAATT 76509 Query 63066 GCTTTCCA 63073 || | ||| Sbjct 76510 GCATACCA 76517 Score = 100 bits (110), Expect = 4e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 63956 actaaatagtttttttgtttCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAAT 64015 ||||||| |||||||| || || || |||||||||| ||| || | || || || || Sbjct 143694 ACTAAATGACTTTTTTGTCTCTTTATGCAGATTTGATATGGCAATGCGTGCAGCAAGGAT 143753 Query 64016 GGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAA 64075 ||||||||| ||||||| |||||| ||| ||||| ||||| || |||| | || | Sbjct 143754 GGCATAATCAGGATGTTTTGTAGTCATAGTCGCTGCAATTTCTGCAGCCAAGTTATCAAG 143813 Query 64076 TTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 ||| || ||||| || ||| ||| | || | || || ||||| Sbjct 143814 TTCAACAGTTGTAACACCAGGATACAAGCCATTTATGACTTTCAT 143858 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 ||| |||||||| ||||| || || |||| ||| || | |||||| || || || || | Sbjct 63800 TACCTGAAATTCCCCAGATAAAACCCTCCTAGTATAGAAATTACTAGTGTATGGCTCTAT 63859 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 || ||||||||||| | |||||| |||||||| || || |||||||| || || | || Sbjct 63860 AGATTCATTATTTCCAAGAATTTGCGCAGTTGAAGCTGTTGGCATAGGGGCTACAAGCAA 63919 Query 62456 ACTATTTCT 62464 ||| || || Sbjct 63920 ACTGTTCCT 63928 Score = 96.9 bits (106), Expect = 4e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 63128 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCATCCGGAC 63186 ||||||| ||| || || || ||||| |||| || ||| || |||||| |||| Sbjct 76864 ATACAATTCTTCAAATTCCTCCCCCCAG-CATTCATGAAGTCCTGGTGATTCATTTGGAC 76922 Query 63187 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63246 |||| || |||| | |||| | | |||||||||||||| | ||| |||||||| | Sbjct 76923 ACATTAAACTCCACATTTCGTCCTTTTCTACTCGTTTCATAAATAAATCTGGAATCCACA 76982 Query 63247 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63306 || ||| |||||||||| || || || || || || |||||||| || | ||| | Sbjct 76983 ATGCATAAAACAGATCTCTGGCCCTCTGCTCTTCTTTGCCAGTATTCTTCTTTAAATCTA 77042 Query 63307 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63361 || | | || || | |||||| || || || || || || | | ||||||| Sbjct 77043 AAAAGTCAAATATGTCTGCATGCCAAGGCTCTAAATAAATTGCAAAAGCTCCAGG 77097 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 62063 CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATT 62122 |||||| ||||| ||||| || |||| ||| |||| | || || || || || | ||| Sbjct 55141 CCATCCATAAAAGTGCATGCTTGTTAATTTTCCATAATTTGGTTCAGCAATGTGAACATT 55200 Query 62123 CATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTT 62182 | ||| ||||||||||| || | || || || || ||||||||||||| ||| | || Sbjct 55201 TAGAGACTGACTTTGATCTATATAAGCACCTCTATCAGCAGCCATTTTTAAGATATTTTT 55260 Query 62183 TTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 || || || ||||||| || ||| | | ||| | ||| || |||| Sbjct 55261 CTGCGGTATCTCCCAAACTGTACGATATAATTTCTTGAGATCATCAGGAA 55310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622412610073480