Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3821 150 2e-31 seq5650 111 2e-19 seq6682 109 6e-19 seq1244 109 6e-19 seq20589 107 2e-18 seq13984 107 2e-18 seq11007 104 3e-17 seq4360 102 9e-17 seq8979 95.1 1e-14 >seq3821 Length=102291 Score = 150 bits (166), Expect = 2e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 ||| | ||||||||| || || ||||| ||||||||||| || || || || || Sbjct 84872 TACCAAATTTTCATTCACAATGCCATCACTCGCTGCAAAAAATGCTAAAATGTGTGAAAT 84931 Query 93535 AAAATGTTTCTCATCAT-CTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGA 93593 ||| || || || || |||||| ||| |||||||| |||||||||||| | || | Sbjct 84932 AAAGTGCTTTTCTTCGGGCTTTAA-CTTTTCCCAATCTCCTAGATCTTTTGATAAGTCAA 84990 Query 93594 CTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGAT 93653 ||||||| ||||||| ||||| ||||| || ||||| ||||| | |||||| ||||||| Sbjct 84991 CTTCTTCAGCAGTCCAGAACGAAGCTTCAGCCTTTTTATACATCTGCCATATATCTTGAT 85050 Query 93654 ATTGAATTGGAAATATGACAAAACGATTAGGGTTATC 93690 | | ||| |||||||| ||||| | | |||||| || Sbjct 85051 ACTCAATGGGAAATATTACAAATCTACGAGGGTTTTC 85087 Score = 127 bits (140), Expect = 2e-24 Identities = 167/230 (73%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 93106 ATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCC 93165 ||| | |||| | ||||| |||||| |||||||| ||||| | || || | | || Sbjct 78305 ATGCATACCT-CATCTCGACTTATCAATTCATTGCTAAATGTAAGGCCAGGCATTAAACC 78363 Query 93166 TCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGC 93225 || ||||| ||||| ||||| || ||||| ||||||||| ||||| ||||| || || Sbjct 78364 TCTCTTCTTCAGCCAGAATATGGATGCAAATGAACCAGAAAAGAATATTCCTTCTACAGC 78423 Query 93226 TGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGC 93285 |||||||| || || ||||| |||| ||| || | ||||| || ||||| Sbjct 78424 AGCAAATGCAACGATTCGTTCACCAAAGGATGCATGCGTATGATTAATCCAATTCAAAGC 78483 Query 93286 CCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 |||||| ||||| ||||| | ||| | || ||||| ||||| || |||| Sbjct 78484 CCAATCAGCTTTCTTCTTCACACAGGAAAGAGTTTCAATAGCATTGAATA 78533 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| ||||| || | || | |||||||| ||||||||||| || ||||| || ||| Sbjct 82892 ATGTAAGTATCAATAAGCAAACTGTACATTTCTGAATGGACATTTTCAATTGCTATCTGG 82951 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 || || |||||||| | ||||| || | ||||||||||||| ||||| || || Sbjct 82952 AAACCATAGAAACAGCGGGCTTCAGTAACCTGCACTTCTTGACTGAATCTTTCAAC 83007 >seq5650 Length=544789 Score = 111 bits (122), Expect = 2e-19 Identities = 78/88 (89%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| |||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 108796 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGC 108737 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||| |||||||||| Sbjct 108736 GTGGGTTCGAACCCCACTCCTGACAAAT 108709 Score = 107 bits (118), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 |||||||| |||||||| |||||||||||||||||||||| |||||||| | | ||| Sbjct 207673 CAGTCAGGGTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAG 207614 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||| ||||||| Sbjct 207613 CGTGGGTTCGAACCCCACTCCTGACA 207588 Score = 104 bits (114), Expect = 3e-17 Identities = 74/84 (88%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| |||||||| |||||||||||||||||||||| |||||||| | | ||||| Sbjct 220274 GTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGCG 220333 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||| ||||||| Sbjct 220334 TGGGTTCGAACCCCACTCCTGACA 220357 Score = 104 bits (114), Expect = 3e-17 Identities = 74/84 (88%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| |||||||| |||||||||||||||||||||| |||||||| | | ||||| Sbjct 224690 GTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGCG 224749 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||| ||||||| Sbjct 224750 TGGGTTCGAACCCCACTCCTGACA 224773 >seq6682 Length=301370 Score = 109 bits (120), Expect = 6e-19 Identities = 75/84 (89%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| |||||||||||||||||||| |||||||||| |||| ||| | ||| ||||| Sbjct 268637 GTCAGGATGGCCGAGTGGTCTAAGGCGTCAGATTTAAGCTCTGATTCTCAATCGAGAGCG 268578 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||| ||||||| Sbjct 268577 TGGGTTCGAACCCCACTCCTGACA 268554 >seq1244 Length=199711 Score = 109 bits (120), Expect = 6e-19 Identities = 77/87 (89%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||||||||| |||||||| | | ||||| Sbjct 188554 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTAAGAGAGCG 188613 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||| ||||||| || Sbjct 188614 TGGGTTCGAACCCCACTCCTGACAGAT 188640 >seq20589 Length=1131937 Score = 107 bits (118), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| |||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 490253 AGTCAGGGTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGC 490312 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||| |||||||| Sbjct 490313 GTGGGTTCGAACCCCACTCCTGACAA 490338 Score = 105 bits (116), Expect = 7e-18 Identities = 75/85 (88%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| |||||||| |||||||||||||||||||||| |||||||| | | ||||| Sbjct 482533 GTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGCG 482592 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||| |||||||| Sbjct 482593 TGGGTTCGAACCCCACTCCTGACAA 482617 Score = 100 bits (110), Expect = 3e-16 Identities = 73/84 (87%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| |||||||| |||||||||||||||||||||| |||||||| | | ||||| Sbjct 421952 GTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGCG 421893 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||||||| |||| ||||||| Sbjct 421892 TGGGTTCGAACTCCACTCCTGACA 421869 >seq13984 Length=169247 Score = 107 bits (118), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| |||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 149022 AGTCAGGGTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGC 149081 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||| |||||||| Sbjct 149082 GTGGGTTCGAACCCCACTCCTGACAA 149107 Score = 96.9 bits (106), Expect = 4e-15 Identities = 74/87 (85%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| |||| ||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 149512 AGTCAGGATGGCTGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGC 149571 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||| |||| |||||||| Sbjct 149572 GTGGGTTCGAACTCCACTTCTGACAAA 149598 >seq11007 Length=1484703 Score = 104 bits (114), Expect = 3e-17 Identities = 75/86 (87%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| |||||||| |||||||||||||||||||||| |||||||| | | ||||| Sbjct 1459960 GTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGCG 1460019 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||| |||||||| Sbjct 1460020 TGGGTTCGAACCCCACTTCTGACAAA 1460045 >seq4360 Length=91057 Score = 102 bits (112), Expect = 9e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| |||||||| |||||||||||||||||||||| |||||||| | | || | Sbjct 29750 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAAC 29691 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| ||||||| Sbjct 29690 GTGGGTTCGAACCCCACTCCTGACA 29666 >seq8979 Length=842415 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/84 (86%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| |||||||| |||||||||||||||||||||| |||||||| | | ||||| Sbjct 456294 GTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGCG 456353 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 | |||||||||||||| |||||| Sbjct 456354 TAGGTTCGAACCCCACTTCTGACA 456377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556382922943720