Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq12019 149 6e-31 seq12235 82.4 7e-11 >seq12019 Length=383594 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | ||||| ||| |||||||| | ||||||||||||||||| ||||| || Sbjct 131429 TCCACCTCTTAATCTCAAAACCAAATGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGA 131488 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || ||| || |||||||| ||||| | || | || ||||||||| ||||| Sbjct 131489 CAGAGTACGGCCATCTTCAAGCTGTTTCCCAGCAAAAATAAGTCTCTGCTGATCTGGAGG 131548 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || || || || |||||| ||| || | | ||||| |||||| || ||| | Sbjct 131549 GATTCCTTCTTTATCTTGGATTTT-TGCTTTTACATTTTCGATGGTGTCACTAGGCTCAA 131607 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | |||||| || || |||||||| |||||||||||||| Sbjct 131608 CTTCTAATGTAATCGTTTTTCCTGTAAGAGTTTTCACAAAAATCTGCAT 131656 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| |||||||||||||| || || | || ||| ||| |||| ||||| ||| Sbjct 131688 GTAGATTCTTTTTGAATATTATAGTCTGAAAGAGTACGACCATCTTCTAATTGTTTACCA 131747 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 || |||| | ||||||||||| || || ||||| || || ||| |||||| ||| || Sbjct 131748 GCAAAGATAAGACGCTGCTGATCAGGTGGAATGCCTTCTTTATCCTGGATTTT-TGCTTT 131806 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | ||| | |||||| | ||| || || | || | || ||||| || ||||| Sbjct 131807 CACGTTTTCAATGGTGTCACTGGGCTCTACCTCTAACGTAATGGTCTTGCCAGTAAGAGT 131866 Query 127096 TTTTACAAAAATCTGCAT 127113 |||||||||||| ||||| Sbjct 131867 TTTTACAAAAATTTGCAT 131884 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 126898 TCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGA 126957 |||||| || || || | ||||| |||||||||||||| ||||| | || || Sbjct 132581 TCGCAAAACTAAGTGCAGGGTAGATTCTTTTTGAATATTATAATCTGAGAGTGTACGTCC 132640 Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || | ||| |||||||| |||| | |||||||||||| ||||| || || || || Sbjct 132641 ATCTTCCAACTGCTTTCCAGCAAAGATAAGTCGCTGCTGATCAGGAGGAATTCCTTCTTT 132700 Query 127018 GTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCA 127076 || | ||| ||| || || | | ||| | || || | || || || | || | Sbjct 132701 GT-CTTGAATTTTAGCTTTTACATTTTCAATTGTATCACTGGGTTCTACCTCCAAAGTGA 132759 Query 127077 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || |||||||| || ||||| |||||||| Sbjct 132760 TGGTTTTTCCAGTCAGAGTCTTCACAAATATCTGCAT 132796 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||||||||| || || ||||| | || || ||| || | ||| || ||| Sbjct 132372 GTTGACTCTTTTTGGATGTTATAATCAGATAATGTACGTCCATCTTCCAACTGCTTACCA 132431 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 || | || | | ||||||||||| || |||||||||||||| |||||| ||| || Sbjct 132432 GCAAATATAAGCCTTTGCTGATCGGGTGGAATGCCCTCCTTGTCTTGGATTTT-TGCTTT 132490 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | ||| | || || | ||| ||||| | || | ||||| || || ||||| Sbjct 132491 GACATTTTCTATTGTATCACTGGGCTCAACTTCTAATGTTATGGTTTTTCCAGTAAGAGT 132550 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| ||||| |||||||| Sbjct 132551 TTTAACAAAGATCTGCAT 132568 >seq12235 Length=595988 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| ||||| |||| || || || | |||||||| || |||||||||||||| Sbjct 179202 CCACCACGTAAACGCAGAACTAAGTGAAGTGTAGACTCCTTCTGAATATTGTAATCTGAT 179261 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || | ||| |||||||| | || | |||||||||||| ||||| Sbjct 179262 AATGTACGACCATCTTCCAACTGCTTTCCAGCAAAAATAAGTCGCTGCTGATCAGGAGGA 179321 Query 127007 ATGCC 127011 || || Sbjct 179322 ATACC 179326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475092743044720