Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq12019 129 5e-25 >seq12019 Length=383594 Score = 129 bits (142), Expect = 5e-25 Identities = 169/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||||| | |||||||| || || ||||| ||||| |||||||| || Sbjct 131655 ATACCTCCCCTAAGCCTTAGGACTAGATGAAGGGTAGATTCTTTTTGAATATTATAGTC- 131713 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | || ||| || |||||||| || || | || | || ||||| || | Sbjct 131714 -TGAAAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGCTGCTGATCAG 131772 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||||||||||||||| || |||||| ||| | ||| | |||||| | || Sbjct 131773 GTGGAATGCCTTCTTTATCCTGGATTTTTGCTTTCACGTTTTCAATGGTGTCACTGGGCT 131832 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || | |||| || ||||| || ||||||||||||||||||||||| Sbjct 131833 CTACCTCTAACGTAATGGTCTTGCCAGTAAGAGTTTTTACAAAAATTTGCAT 131884 Score = 102 bits (112), Expect = 7e-17 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45106 ATTTTA--TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATT 45163 |||||| ||||||| ||||| |||| || |||||||| || |||||||| || || || Sbjct 125393 ATTTTAATTTCCTCCACGGAGTCTCAGAACAAGATGCAGAGTAGATTCCTTCTGAATGTT 125452 Query 45164 ATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTG 45223 |||||| | |||| | ||| || | || || || || | || | |||||||| Sbjct 125453 ATAATCAGAAAGGGTTCTGCCATCTTCAAGCTGCTTGCCAGCAAAAATAAGACGTTGCTG 125512 Query 45224 GTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGA 45283 || || ||||| |||||||||||||| |||||| || | ||||| ||||| Sbjct 125513 ATCTGGAGGAATTCCTTCTTTATCTTGGATTTTTGCCTTCACATTTTCTATTGTGTCACT 125572 Query 45284 AGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 | || ||||| ||||| | ||| || || Sbjct 125573 TGGTTCCACTTCAAGAGTTATCGTCTTACC 125602 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || |||||||||||||||||||| || ||||| || || || ||||| | Sbjct 132111 ATCCCTCCTCGAAGCCTCAACACTAGATGCAGAGTAGATTCTTTCTGAATGTTATAGT-- 132168 Query 45171 CTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 |||| | | | ||| ||||| || || || || |||| | | || || || | Sbjct 132169 CTGATAATGTACGCCCATCTTCCAACTGCTTACCAGCAAATATGAGCCTCTGTTGATCAG 132228 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || |||||||| |||||||| ||||| ||| | ||| | ||||| | | Sbjct 132229 GTGGGATGCCTTCCTTATCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCACTGGGTT 132288 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| | |||| || || || || |||||||| ||||| || ||||| Sbjct 132289 CAACTTCCAATGTAATGGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 132340 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | || | ||| |||| ||||| || ||||| ||||| ||||||||||| Sbjct 132567 ATACCTCCTCTAAGTCGCAAAACTAAGTGCAGGGTAGATTCTTTTTGAATATTATAATC- 132625 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| || | | ||| ||||| || ||||| || | || | ||| ||||| || | Sbjct 132626 -TGAGAGTGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATAAGTCGCTGCTGATCAG 132684 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| |||||||| ||||||||||| ||| | ||| | || || | | Sbjct 132685 GAGGAATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATTGTATCACTGGGTT 132744 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || | ||| | ||||| || || ||||| || ||||| || ||||| Sbjct 132745 CTACCTCCAAAGTGATGGTTTTTCCAGTCAGAGTCTTCACAAATATCTGCAT 132796 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA- 45184 ||||| || | ||| || || || || ||||| || || || || ||| | | | Sbjct 131442 CTCAAAACCAAATGAAGAGTAGACTCTTTTTGAATGTTGTAGTCA--GACAGAGTACGGC 131499 Query 45185 -ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTT 45243 ||| || | ||||| || || | || | || ||||| || || || || ||||||| Sbjct 131500 CATCTTCAAGCTGTTTCCCAGCAAAAATAAGTCTCTGCTGATCTGGAGGGATTCCTTCTT 131559 Query 45244 TATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 ||||||| |||||| ||| | ||| | |||||| || ||| ||||| | |||| Sbjct 131560 TATCTTGGATTTTTGCTTTTACATTTTCGATGGTGTCACTAGGCTCAACTTCTAATGTAA 131619 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || |||||||| |||||||| ||||| Sbjct 131620 TCGTTTTTCCTGTAAGAGTTTTCACAAAAATCTGCAT 131656 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || || || || ||||| |||| | | ||| || || || ||||| |||||||| Sbjct 131957 ATCCTCTAACTGCTTCCCTGCAAATATAAGCCTTTGTTGATCAGGAGGAATACCTTCTTT 132016 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||| || ||||| ||| | ||||| || || || ||| ||||| | ||| | Sbjct 132017 ATCCTGGATTTTAGCTTTAACATTTTCTATTGTATCACTAGGCTCAACTTCTAAAGTGAT 132076 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || || |||||||| |||||||| |||||| Sbjct 132077 AGTTTTACCAGTAAGAGTTTTAACAAAAATCTGCATC 132113 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 |||||||| || ||||| | ||||| |||||||| |||||||| || | ||| | Sbjct 131137 AGCCTCAAAACAAGATGTAATGTTGACTCCTTTTGAATATTATAGTCTGATAATGTTCTG 131196 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 ||| || | || || || || | ||||| | ||||| || || ||||| |||||| Sbjct 131197 CCATCTTCTAGCTGCTTACCAGCAAAAATCAACCTCTGCTGATCTGGTGGAATACCTTCT 131256 Query 45243 TTATCTTGAATTTTT 45257 |||||||| |||||| Sbjct 131257 TTATCTTGTATTTTT 131271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451615307803880