Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3821 170 2e-37 seq15467 120 3e-22 >seq3821 Length=102291 Score = 170 bits (188), Expect = 2e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||| ||||||||||||||| |||||| | |||||||| | ||||| || | Sbjct 78312 CCTCATCTCGACTTATCAATTCATTGCTAAATGTAAGGCCAGGCATTAAACCTCTCTTCT 78371 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || |||||||| |||||||||||||| |||||||| || ||||| | Sbjct 78372 TCAGCCAGAATATGGATGCAAATGAACCAGAAAAGAATATTCCTTCTACAGCAGCAAATG 78431 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 |||| | || ||| ||| | |||| ||| || |||||| |||| |||||||||| Sbjct 78432 CAACGATTCGTTCACCAAAGGATGCATGCGTATGATTAATCCAATTCAAAGCCCAATCAG 78491 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 | ||||| || ||||| | | || || |||| ||| |||| Sbjct 78492 CTTTCTTCTTCACACAGGAAAGAGTTTCAATAGCATTGAATA 78533 Score = 170 bits (188), Expect = 2e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||||||||||||| || || |||||||| ||||||||||||||||| | ||| |||| Sbjct 84873 ACCAAATTTTCATTCACAATGCCATCACTCGCTGCAAAAAATGCTAAAATGTGTGAAATA 84932 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACT 19464 || || ||||| || | |||| | | |||||| | |||||| ||||| || ||| Sbjct 84933 AAGTGCTTTTCTTCGGGCTTTAACTTTTCCCAATCTCCTAGATCTTTTGATAAGTCAACT 84992 Query 19465 TCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATAT 19524 |||||| | ||||| || ||||| || || ||||||||||| | ||||||||| |||| Sbjct 84993 TCTTCAGCAGTCCAGAACGAAGCTTCAGCCTTTTTATACATCTGCCATATATCTTGATAC 85052 Query 19525 TGTATAGGAAATATAACAAATCTA 19548 | || |||||||| ||||||||| Sbjct 85053 TCAATGGGAAATATTACAAATCTA 85076 Score = 122 bits (134), Expect = 1e-22 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18773 ATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCA 18831 |||||| ||| | ||| ||||| || |||||||||| ||| || ||| ||||||| | | Sbjct 77744 ATCCTAGTTCCACTAGAAGTCTGTCAGCTACAAATTCAATGTACTGT-TTCATCAACTTA 77802 Query 18832 CAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTT 18891 |||||||||||||| |||||| | ||| ||||| |||||||||||||| ||| | Sbjct 77803 TTGTTCATTCCTATTAAAGCAACAGGCAATGCTTCTGTGAGAAATTCTTGTTCAATAGAT 77862 Query 18892 ACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTA 18951 || || || |||||||| |||||| | ||| || | || |||||| | Sbjct 77863 ACGGCATCAGATATAATTTGGGTAACTCTTTTTTCTGATGGTTTATTTACAAGATGACTG 77922 Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCT 18985 ||||| | || |||||||||||||| | |||| Sbjct 77923 AACATTAGGCAGGCAAAATCACAATGCAAGCCCT 77956 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 19223 TATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAG 19282 ||||||||| || | ||| || | |||||||||||||||||||| | |||||| || | Sbjct 82884 TATCTTTAATGTAAGTATCAATAAGCAAACTGTACATTTCTGAATGGACATTTTCAATTG 82943 Query 19283 CCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTT 19342 | ||||| || || || ||||| | ||||| || | ||| ||||| || ||||||| Sbjct 82944 CTATCTGGAAACCATAGAAACAGCGGGCTTCAGTAACCTGCACTTCTTGACTGAATCTTT 83003 Query 19343 CGACCAAAT 19351 | ||| ||| Sbjct 83004 CAACCTAAT 83012 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/158 (74%), Gaps = 10/158 (6%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGA---ATTCTCTTCATTAGAATTCATTACTCCCAT 18668 ||||||||| |||| || | ||| || ||| | ||||| ||| ||||| Sbjct 76391 TTAAAAATCTGCATCTAATGTGAAACGGTGATCCTCCTTTTTAGA---CATGACTCCACA 76447 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAA--TGATATA 18726 ||||||||||| | ||| |||| ||||| || || ||||| || ||||| | |||| Sbjct 76448 CTTTTGATATTCTCCGACTTTTTTCTCAAAAAAGTTTGTTTTCCCTTCTAAGCTAATATG 76507 Query 18727 CATTCCATAAAATCAAATGGATTTTTTACATTATATAT 18764 | |||||||||||||||||||||| ||||||||||| Sbjct 76508 C--TCCATAAAATCAAATGGATTTTCAACATTATATAT 76543 >seq15467 Length=153806 Score = 120 bits (132), Expect = 3e-22 Identities = 121/156 (78%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 47051 CCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATT 47110 ||||||||| || ||||| || |||||||| |||| | ||||| | ||| |||| ||| Sbjct 55141 CCATCCATAAAAGTGCATGCTTGTTAATTTTCCATAATTTGGTTCAGCAATGTGAACATT 55200 Query 47111 AAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCT 47170 ||||| ||||| ||||| ||| | |||||||||||||| ||||| | ||| ||| | Sbjct 55201 TAGAGACTGACTTTGATCTATATAAGCACCTCTATCAGCAGCCATTTTTAAGATATTTTT 55260 Query 47171 TTGTGGTATCTCCCATACTGTTTTATA-AATTTGTT 47205 || ||||||||||| ||||| ||| ||||| || Sbjct 55261 CTGCGGTATCTCCCAAACTGTACGATATAATTTCTT 55296 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 |||||||| ||||||| || || | |||| | |||||| || ||||| ||||||||| Sbjct 63804 TGAAATTCCCCAGATAAAACCCTCCTAGTATAGAAATTACTAGTGTATGGCTCTATAGAT 63863 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||||| |||||| |||||||| ||||| ||||| | || || | || || Sbjct 63864 TCATTATTTCCAAGAATTTGCGCAGTTGAAGCTGTTGGCATAGGGGCTACAAGCAAACTG 63923 Query 47448 TTTCTTACTCCATA 47461 || ||||||||||| Sbjct 63924 TTCCTTACTCCATA 63937 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| ||||| || | ||||||||||||||| ||||||| || || || || || | Sbjct 107176 AGTTCCAGAATTGAAGAGGGTTGGAGATGCATGAGTAAACCACTTTTCAGACAATAAATG 107235 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 |||||| |||||| | | ||| || || ||||||||| | || || ||||| | Sbjct 107236 ATATGTCTCAATAGCTGCATCAATGTCATCACCATGTATACCAACAGCAACTCGCATAAG 107295 Query 48719 CATATATTGAGGTCTTTCAACAA 48741 ||||| ||| |||| ||||||| Sbjct 107296 CATATGTTGCGGTCGCTCAACAA 107318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561626419306920