Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq12019 170 2e-37 seq1189 87.8 1e-12 seq12235 84.2 2e-11 seq6141 82.4 6e-11 >seq12019 Length=383594 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | || |||||||| || ||||||||||||||||| ||||| ||||| | | Sbjct 132570 CCTCCTCTAAGTCGCAAAACTAAGTGCAGGGTAGATTCTTTTTGAATATTATAATCTGAG 132629 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||| ||||| || ||||| || | ||||| ||||| || ||| Sbjct 132630 AGTGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATAAGTCGCTGCTGATCAGGAGGA 132689 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| ||||||||||| ||||||| |||| | || ||| | ||| || Sbjct 132690 ATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATTGTATCACTGGGTTCTACC 132749 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| ||||| || || | ||| || |||||||||||||| Sbjct 132750 TCCAAAGTGATGGTTTTTCCAGTCAGAGTCTTCACAAATATCTGCAT 132796 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| |||||||| | ||||| |||||||| ||||| |||||||| || ||||| || | Sbjct 131428 TTCCACCTCTTAATCTCAAAACCAAATGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAG 131487 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | | |||| || | || || || ||||| || | | ||| ||||| || | Sbjct 131488 ACAGAGTACGGCCATCTTCAAGCTGTTTCCCAGCAAAAATAAGTCTCTGCTGATCTGGAG 131547 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || |||||||||||||| |||||| ||||||| |||| | |||||| | || | Sbjct 131548 GGATTCCTTCTTTATCTTGGATTTTTGCTTTTACATTTTCGATGGTGTCACTAGGCTCAA 131607 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | || | |||||| || || | |||||| ||||| |||||||| Sbjct 131608 CTTCTAATGTAATCGTTTTTCCTGTAAGAGTTTTCACAAAAATCTGCAT 131656 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | | || |||| ||||||||||||||||||||| ||||| || || | Sbjct 131658 CCTCCCCTAAGCCTTAGGACTAGATGAAGGGTAGATTCTTTTTGAATATTATAGTCTGAA 131717 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| || ||||| ||||| ||||| || | |||||| ||||| || ||| Sbjct 131718 AGAGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGA 131777 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||||||||| || |||||| ||| || |||| | |||||| | || || Sbjct 131778 ATGCCTTCTTTATCCTGGATTTTTGCTTTCACGTTTTCAATGGTGTCACTGGGCTCTACC 131837 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | || ||||| || | |||||||||||| || ||||| Sbjct 131838 TCTAACGTAATGGTCTTGCCAGTAAGAGTTTTTACAAAAATTTGCAT 131884 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| || | || || || || || || |||||||| || |||||||| || | Sbjct 131886 CCTCCTCTCAACCTTAGTACCAAGTGCAGAGTCGATTCTTTCTGAATATTGTAGTCCGAT 131945 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| || || ||||| ||||||||||| | | |||||||| || ||| Sbjct 131946 AAAGTACGTCCATCCTCTAACTGCTTCCCTGCAAATATAAGCCTTTGTTGATCAGGAGGA 132005 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||||||||| || ||||| ||| ||| |||||| || ||| | || ||| Sbjct 132006 ATACCTTCTTTATCCTGGATTTTAGCTTTAACATTTTCTATTGTATCACTAGGCTCAACT 132065 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| ||||| || || | |||||| ||||| |||||||| Sbjct 132066 TCTAAAGTGATAGTTTTACCAGTAAGAGTTTTAACAAAAATCTGCAT 132112 Score = 132 bits (146), Expect = 4e-26 Identities = 162/220 (74%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 ||||||||| | | | | ||| | ||| || |||||||| || || || || ||||| Sbjct 125399 ATTTCCTCCACGGAGTCTCAGAACAAGATGCAGAGTAGATTCCTTCTGAATGTTATAATC 125458 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | | |||||| |||| || | ||||| || ||||| || | ||| || ||||| || Sbjct 125459 AGAAAGGGTTCTGCCATCTTCAAGCTGCTTGCCAGCAAAAATAAGACGTTGCTGATCTGG 125518 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 ||||| |||||||||||||| |||||| || ||| |||||| |||||| | ||| Sbjct 125519 AGGAATTCCTTCTTTATCTTGGATTTTTGCCTTCACATTTTCTATTGTGTCACTTGGTTC 125578 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458 |||||||||||| | ||| || || | ||| ||||||| Sbjct 125579 CACTTCAAGAGTTATCGTCTTACCTG-CAAATATTTTACA 125617 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || |||| ||| || ||||||||||| || || || || || | | || | |||| Sbjct 132129 AACACTAGATGCAGAGTAGATTCTTTCTGAATGTTATAGTCTGATAATGTACGCCCATCT 132188 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||| |||||||| |||||||| | | ||||||||| || || |||||||| |||||| Sbjct 132189 TCCAACTGCTTACCAGCAAATATGAGCCTCTGTTGATCAGGTGGGATGCCTTCCTTATCT 132248 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || ||||| ||| ||| |||| | |||||| | ||| ||||| | || | || Sbjct 132249 TGGATTTTAGCTTTCACATTTTCAATTGTGTCACTGGGTTCAACTTCCAATGTAATGGTC 132308 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | |||||| ||||| |||||||| Sbjct 132309 TTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 132340 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 ||||||||||| || ||||| || || || || ||||| | | |||| |||| || Sbjct 132816 ACTAAATGAAGAGTGGATTCCTTCTGAATGTTATAATCAGACAAGGTTCGACCATCTTCT 132875 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| ||||||||||| | | |||||| || || ||||| ||||| || ||||| Sbjct 132876 AATTGCTTTCCTGCAAATATTAGCCTCTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGG 132935 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||||||| |||| | || ||| | ||||| || | ||||| ||||| Sbjct 132936 ATCTTAGCTTTTACATTTTCAATGGTATCACTTGGCTCCACCTCCAAAGTGATGGTTTTT 132995 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||||| ||||| |||||||| Sbjct 132996 CCAGTAAGTGTTTTCACAAAGATCTGCAT 133024 Score = 109 bits (120), Expect = 4e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 ||||| | ||| | || || || ||||| ||||| || || | | |||||| |||| Sbjct 131143 AAAACAAGATGTAATGTTGACTCCTTTTGAATATTATAGTCTGATAATGTTCTGCCATCT 131202 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || | |||||||| ||||| ||||| | ||| ||||| || ||||| |||||||||||| Sbjct 131203 TCTAGCTGCTTACCAGCAAAAATCAACCTCTGCTGATCTGGTGGAATACCTTCTTTATCT 131262 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCA 101410 || |||||| ||| ||| |||| | ||| ||| Sbjct 131263 TGTATTTTTGCTTTAACATTTTCAATAGTATCA 131295 >seq1189 Length=753237 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 ||||| || | ||||||||||| || ||||||||||| | | ||| || |||| ||| Sbjct 67468 ACTAAGTGCAATGTAGATTCTTTCTGAATATTGTAATCTGACAAAGTCCTTCCATCTTCC 67409 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCT 101368 || || ||||| ||||| ||||| ||||| ||||| || || || ||| Sbjct 67408 AACTGTTTACCAGCAAAAATCAATCGCTGCTGATCAGGAGGGATACCT 67361 >seq12235 Length=595988 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | |||||| | |||||| ||||| ||||| || || || ||||||||||| | Sbjct 179202 CCACCACGTAAACGCAGAACTAAGTGAAGTGTAGACTCCTTCTGAATATTGTAATCTGAT 179261 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||| ||||| || ||||| || | ||||| ||||| || ||| Sbjct 179262 AATGTACGACCATCTTCCAACTGCTTTCCAGCAAAAATAAGTCGCTGCTGATCAGGAGGA 179321 Query 101363 ATGCCT 101368 || ||| Sbjct 179322 ATACCT 179327 >seq6141 Length=695686 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 5/108 (5%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 |||||||| || || || |||||||| |||| || |||| || || || ||||| Sbjct 7932 GTAGATTCATTCTGAATTTTGTAATC-----TAGTCCTTTCATCTTCAAACTGTTTACCA 7878 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| ||||| || || ||||| || || || ||||||||||||||| Sbjct 7877 GCAAAAATCAATCGATGCTGATCAGGAGGGATACCTTCTTTATCTTGA 7830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395946830519121