Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq12019 167 4e-36 seq1189 87.8 3e-12 >seq12019 Length=383594 Score = 167 bits (184), Expect = 4e-36 Identities = 179/237 (76%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| |||||||| | ||||||| |||| || | ||||| |||||| Sbjct 131876 AATTTGCATACCTCCTCTCAACCTTAGTACCAAGTGCAGAGTCGATTCTTTCTGAATATT 131935 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| ||||| || | ||| ||||| || || || ||||| || | || ||||| Sbjct 131936 GTAGTCCGATAAAGTACGTCCATCCTCTAACTGCTTCCCTGCAAATATAAGCCTTTGTTG 131995 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| || ||||||||||| || ||||| | ||| | |||| || ||||| Sbjct 131996 ATCAGGAGGAATACCTTCTTTATCCTGGATTTTAGCTTTAACATTTTCTATTGTATCACT 132055 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||||||||| ||| ||||||||||| || || ||||| ||||| || ||||| Sbjct 132056 AGGCTCAACTTCTAAAGTGATAGTTTTACCAGTAAGAGTTTTAACAAAAATCTGCAT 132112 Score = 158 bits (174), Expect = 2e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || |||||||||| | | || ||||| ||||| | ||| || |||||| Sbjct 131118 AATTTGCATGCCACCTCTCAGCCTCAAAACAAGATGTAATGTTGACTCCTTTTGAATATT 131177 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| ||||| ||||| ||| |||| || || || |||||||| || ||||| || Sbjct 131178 ATAGTCTGATAATGTTCTGCCATCTTCTAGCTGCTTACCAGCAAAAATCAACCTCTGCTG 131237 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || |||||||||||||||||||| | ||| | |||| ||||||||| Sbjct 131238 ATCTGGTGGAATACCTTCTTTATCTTGTATTTTTGCTTTAACATTTTCAATAGTATCACT 131297 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTG 193335 | ||| ||||| | |||||||||||||||| Sbjct 131298 GGGCTCGACTTCCAACGTTATAGTTTTACCTG 131329 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||| |||| | |||| ||| | |||| |||||| ||| || ||||| Sbjct 131427 ATTCCACCTCTTAATCTCAAAACCAAATGAAGAGTAGACTCTTTTTGAATGTTGTAGTCA 131486 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | ||||| || |||||||| | |||||| ||||| ||| Sbjct 131487 GACAGAGTACGGCCATCTTCAAGCTGTTTCCCAGCAAAAATAAGTCTCTGCTGATCTGGA 131546 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||||||||| ||||| | ||||| |||| || || || || |||| Sbjct 131547 GGGATTCCTTCTTTATCTTGGATTTTTGCTTTTACATTTTCGATGGTGTCACTAGGCTCA 131606 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||| || || ||||| ||||| || ||||| ||||| || ||||| Sbjct 131607 ACTTCTAATGTAATCGTTTTTCCTGTAAGAGTTTTCACAAAAATCTGCAT 131656 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| ||||| | ||| | || | |||| |||| ||||| ||||||||| || Sbjct 132567 ATACCTCCTCTAAGTCGCAAAACTAAGTGCAGGGTAGATTCTTTTTGAATATTATAATCT 132626 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || || || ||||| ||||| || | || ||| ||||||||| Sbjct 132627 GAGAGTGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATAAGTCGCTGCTGATCAGGA 132686 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| ||||| ||||| | ||||| |||| ||| ||||| | || Sbjct 132687 GGAATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATTGTATCACTGGGTTCT 132746 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| || ||||| || || || || || |||||||| ||||| Sbjct 132747 ACCTCCAAAGTGATGGTTTTTCCAGTCAGAGTCTTCACAAATATCTGCAT 132796 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || || | | || || ||||| | |||| ||||| |||||||||||| Sbjct 131655 ATACCTCCCCTAAGCCTTAGGACTAGATGAAGGGTAGATTCTTTTTGAATATTATAGTCT 131714 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | ||| ||||||||||| || ||||| || | | ||| |||||||| Sbjct 131715 GAAAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGCTGCTGATCAGGT 131774 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || ||||| | ||| | ||| ||| || || | ||| Sbjct 131775 GGAATGCCTTCTTTATCCTGGATTTTTGCTTTCACGTTTTCAATGGTGTCACTGGGCTCT 131834 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||| || || || || || || || ||||||||||| |||||||| Sbjct 131835 ACCTCTAACGTAATGGTCTTGCCAGTAAGAGTTTTTACAAAAATTTGCAT 131884 Score = 116 bits (128), Expect = 7e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||||| |||| ||||| ||| |||||||| ||||| || | ||| || Sbjct 132132 ACTAGATGCAGAGTAGATTCTTTCTGAATGTTATAGTCTGATAATGTACGCCCATCTTCC 132191 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 || || || || ||||| || | |||||||||||||| || || ||||| |||||||| Sbjct 132192 AACTGCTTACCAGCAAATATGAGCCTCTGTTGATCAGGTGGGATGCCTTCCTTATCTTGG 132251 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||| | ||| | |||| ||| || || | |||||||| | || || || || Sbjct 132252 ATTTTAGCTTTCACATTTTCAATTGTGTCACTGGGTTCAACTTCCAATGTAATGGTCTTT 132311 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| ||||| || ||||| Sbjct 132312 CCAGTAAGAGTTTTAACAAAGATCTGCAT 132340 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| |||| | | || || ||||||||||| | |||||| || ||||| || Sbjct 132339 ATACCTCCTCGAAGCCTTAGAACAAGATGCAATGTTGACTCTTTTTGGATGTTATAATCA 132398 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 ||||| || | ||| || || || || || ||||| || | || || ||||| || Sbjct 132399 GATAATGTACGTCCATCTTCCAACTGCTTACCAGCAAATATAAGCCTTTGCTGATCGGGT 132458 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || ||||| ||||| | ||| | |||| || ||||| | |||| Sbjct 132459 GGAATGCCCTCCTTGTCTTGGATTTTTGCTTTGACATTTTCTATTGTATCACTGGGCTCA 132518 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||| ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 132519 ACTTCTAATGTTATGGTTTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 132568 Score = 89.7 bits (98), Expect = 9e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || || ||||||| |||| || || ||| ||||| || || | ||||| ||| Sbjct 125418 AGAACAAGATGCAGAGTAGATTCCTTCTGAATGTTATAATCAGAAAGGGTTCTGCCATCT 125477 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | || || || |||||||| | | || ||||| ||||| ||||||||||||||| Sbjct 125478 TCAAGCTGCTTGCCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTATCT 125537 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || ||||| | || | |||| || || || | || ||||| |||||||| || Sbjct 125538 TGGATTTTTGCCTTCACATTTTCTATTGTGTCACTTGGTTCCACTTCAAGAGTTATCGTC 125597 Query 193329 TTACCTG 193335 ||||||| Sbjct 125598 TTACCTG 125604 >seq1189 Length=753237 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| | ||| ||||| || | |||||||||| ||||| |||||| || || || Sbjct 67486 CCACCACGCAAGCGAAGGACTAAGTGCAATGTAGATTCTTTCTGAATATTGTAATCTGAC 67427 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || || ||| || || ||||| || |||||||| |||| ||| ||||||||||| Sbjct 67426 AAAGTCCTTCCATCTTCCAACTGTTTACCAGCAAAAATCAATCGCTGCTGATCAGGAGGG 67367 Query 193254 ATTCCT 193259 || ||| Sbjct 67366 ATACCT 67361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898882350330960