Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq12019 140 5e-28 seq3821 102 1e-16 >seq12019 Length=383594 Score = 140 bits (154), Expect = 5e-28 Identities = 153/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 155850 GGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAA 155909 || |||||||| || || |||||||| ||||| |||| ||| || ||| ||| Sbjct 131327 GGTAAAACTATAACGTTGGAAGTCGAGCCCAGTGATACTATTGAAAATGTTAAAGCAAAA 131268 Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 ||||||||||||||||| || || ||||| || || || ||||||| ||| ||||||||| Sbjct 131267 ATACAAGATAAAGAAGGTATTCCACCAGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAG 131208 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-GAGGCGACGCTTCATTT 156028 || |||||| |||||| |||||||| |||||||| || ||| ||| | || | ||| | Sbjct 131207 CTAGAAGATGGCAGAACATTATCAGACTATAATAT-TCAAAAGGAGTCAACATTACATCT 131149 Query 156029 AGTGTTAAGATTAAGAGGCGG 156049 || || || | ||||| || Sbjct 131148 TGTTTTGAGGCTGAGAGGTGG 131128 Score = 140 bits (154), Expect = 5e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | || |||||||| |||||||||||||| || | | Sbjct 131656 ATGCAGATTTTTGTGAAAACTCTTACAGGAAAAACGATTACATTAGAAGTTGAGCCTAGT 131597 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || ||| ||||| |||||||||||||| || |||||||| || Sbjct 131596 GACACCATCGAAAATGTAAAAGCAAAAATCCAAGATAAAGAAGGAATCCCTCCAGATCAG 131537 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | |||| ||| || || ||||| |||||| | | ||| | || || || || Sbjct 131536 CAGAGACTTATTTTTGCTGGGAAACAGCTTGAAGATGGCCGTACTCTGTCTGACTACAAC 131477 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||| | || |||||||| || || ||||||||||| || Sbjct 131476 ATTCAAAAAGAGTCTACTCTTCATTTGGTTTTGAGATTAAGAGGTGG 131430 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| ||||||| | ||||| |||||||| || |||||||| || | | Sbjct 132112 ATGCAGATTTTTGTTAAAACTCTTACTGGTAAAACTATCACTTTAGAAGTTGAGCCTAGT 132053 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| || ||| |||||| || ||||||||||| || ||||| || ||| Sbjct 132052 GATACAATAGAAAATGTTAAAGCTAAAATCCAGGATAAAGAAGGTATTCCTCCTGATCAA 131993 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | ||| || |||||| | || ||| | |||||||| || || ||| Sbjct 131992 CAAAGGCTTATATTTGCAGGGAAGCAGTTAGAGGATGGACGTACTTTATCGGACTACAAT 131933 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| |||| || || || || |||| || ||||| ||| Sbjct 131932 ATTCAGAAAGAATCGACTCTGCACTTGGTACTAAGGTTGAGAGGAGGT 131885 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || ||||||||||||| || || || || || ||| | Sbjct 132796 ATGCAGATATTTGTGAAGACTCTGACTGGAAAAACCATCACTTTGGAGGTAGAACCCAGT 132737 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| |||||| ||||| |||||||| || ||||| || || Sbjct 132736 GATACAATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 132677 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || |||||| | |||||| | || | |||||||||||| Sbjct 132676 CAGCGACTTATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACACTCTCAGATTATAAT 132617 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || || || ||||| || || | ||||| ||| Sbjct 132616 ATTCAAAAAGAATCTACCCTGCACTTAGTTTTGCGACTTAGAGGAGGT 132569 Score = 105 bits (116), Expect = 1e-17 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| ||||||| | ||||||||||| || ||||||||||| || | Sbjct 132568 ATGCAGATCTTTGTTAAAACTCTTACTGGAAAAACCATAACATTAGAAGTTGAGCCCAGT 132509 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| || ||| ||||| ||||| || || ||||| || || || || Sbjct 132508 GATACAATAGAAAATGTCAAAGCAAAAATCCAAGACAAGGAGGGCATTCCACCCGATCAG 132449 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | ||| ||||||||| | |||||| | || ||||| ||||||| Sbjct 132448 CAAAGGCTTATATTTGCTGGTAAGCAGTTGGAAGATGGACGTACATTATCTGATTATA-- 132391 Query 156003 ATATCCAAAGAG 156014 | ||||||| || Sbjct 132390 ACATCCAAAAAG 132379 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | |||||| | ||||||||||| || || || || || || Sbjct 133027 AAAATGCAGATCTTTGTGAAAACACTTACTGGAAAAACCATCACTTTGGAGGTGGAGCCA 132968 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| ||| ||| || ||| ||| || ||||| || ||||| || ||||| || Sbjct 132967 AGTGATACCATTGAAAATGTAAAAGCTAAGATCCAAGACAAGGAAGGAATTCCTCCTGAC 132908 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||| || | || | ||| || ||||| | |||||| |||| || || |||||| Sbjct 132907 CAACAGAGGCTAATATTTGCAGGAAAGCAATTAGAAGATGGTCGAACCTTGTCTGATTAT 132848 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || || | || ||||||||||| | || ||| | || ||| Sbjct 132847 AACATTCAGAAGGAATCCACTCTTCATTTAGTCCTCAGGTTACGTGGTGGT 132797 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | ||||| || || ||||| ||||| || || | Sbjct 131884 ATGCAAATTTTTGTAAAAACTCTTACTGGCAAGACCATTACGTTAGAGGTAGAGCCCAGT 131825 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||||| ||||| || |||||||||||||| || || || || Sbjct 131824 GACACCATTGAAAACGTGAAAGCAAAAATCCAGGATAAAGAAGGCATTCCACCTGATCAG 131765 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | || | ||| ||||| || | |||||| | ||| | ||||| |||||| Sbjct 131764 CAGCGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCAGACTATAAT 131705 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || |||||| |||| |||| | || || ||| Sbjct 131704 ATTCAAAAAGAATCTACCCTTCATCTAGTCCTAAGGCTTAGGGGAGGT 131657 Score = 87.8 bits (96), Expect = 3e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 155894 AAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGAT 155953 ||| ||||| ||||| |||||||||||||| || |||||||| || ||| | | || Sbjct 125558 AAATGTGAAGGCAAAAATCCAAGATAAAGAAGGAATTCCTCCAGATCAGCAACGTCTTAT 125499 Query 155954 TTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATAT 156004 || ||| || |||||||| |||||| |||||| | || |||||||| || Sbjct 125498 TTTTGCTGGCAAGCAGCTTGAAGATGGCAGAACCCTTTCTGATTATAACAT 125448 >seq3821 Length=102291 Score = 102 bits (112), Expect = 1e-16 Identities = 152/216 (70%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 18528 TATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCA 18587 |||||||| ||||||||| ||||| || || || ||| | ||| |||||||| | Sbjct 84864 TATAAAAT-----TACCAAATTTTCATTCACAATGCCATCACTCGCTGCAAAAAATGCTA 84918 Query 18588 AAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTT 18647 ||| | | ||| || || ||||| | ||| | || | ||| || ||| ||||| Sbjct 84919 AAATGTGTGAAATAAAGTGCTTTTCTTCGGGCTTTAACTTTTCCCAATCTCCTAGATCTT 84978 Query 18648 TTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTTTAT 18707 |||||| ||||||||||| | ||||| || || | ||| |||| ||| ||||| | Sbjct 84979 TTGATAAGTCAACTTCTTCAGCAGTCCAGAACGAAGCTTCAGCCTTTTTATACATCTGCC 85038 Query 18708 AAATATCTTCATGTTGTATAGGAAATAATATATATC 18743 | ||||||| || | || ||||||| || | ||| Sbjct 85039 ATATATCTTGATACTCAATGGGAAATATTACAAATC 85074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731243934894800