Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq12019 167 5e-36 seq3821 131 3e-25 seq18955 96.9 7e-15 seq12235 84.2 4e-11 >seq12019 Length=383594 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| |||||||| || || ||||| || | |||| ||||| ||||||||||| Sbjct 132567 ATACCTCCTCTAAGTCGCAAAACTAAGTGCAGGGTAGATTCTTTTTGAATATTATAATCT 132626 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| ||| |||| ||||| || || ||||||||||| | || ||| |||||||| Sbjct 132627 GAGAGTGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATAAGTCGCTGCTGATCAGGA 132686 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| |||||| ||||||||| || | ||| | |||| Sbjct 132687 GGAATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATTGTATCACTGGGTTCT 132746 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| |||||||| ||||| | || || | |||||||||||| Sbjct 132747 ACCTCCAAAGTGATGGTTTTTCCAGTCAGAGTCTTCACAAATATCTGCAT 132796 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| ||| | || |||| ||| | ||||| ||||| || ||||| || Sbjct 132111 ATCCCTCCTCGAAGCCTCAACACTAGATGCAGAGTAGATTCTTTCTGAATGTTATAGTCT 132170 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| || |||| ||||| || ||||||||||| || | ||||||||||||||| Sbjct 132171 GATAATGTACGCCCATCTTCCAACTGCTTACCAGCAAATATGAGCCTCTGTTGATCAGGT 132230 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| |||||| ||| ||||| || | || | ||| Sbjct 132231 GGGATGCCTTCCTTATCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCACTGGGTTCA 132290 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||||| || ||||| | ||||||| ||| |||||||| Sbjct 132291 ACTTCCAATGTAATGGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 132340 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| |||| ||| | || || | ||| || || | |||||| ||| ||||||||| Sbjct 132339 ATACCTCCTCGAAGCCTTAGAACAAGATGCAATGTTGACTCTTTTTGGATGTTATAATCA 132398 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| ||| |||| ||||| || ||||||||||| || | || || ||||| ||| Sbjct 132399 GATAATGTACGTCCATCTTCCAACTGCTTACCAGCAAATATAAGCCTTTGCTGATCGGGT 132458 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| ||||| ||| ||||| ||| | ||| | || Sbjct 132459 GGAATGCCCTCCTTGTCTTGGATTTTTGCTTTGACATTTTCTATTGTATCACTGGGCTCA 132518 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| || |||||||| ||||| | ||||||| ||| |||||||| Sbjct 132519 ACTTCTAATGTTATGGTTTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 132568 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | || ||| || || | ||| | ||||| ||||| || || Sbjct 131883 ATACCTCCTCTCAACCTTAGTACCAAGTGCAGAGTCGATTCTTTCTGAATATTGTAGTCC 131942 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || ||| |||| || || || || || ||||| || | || ||||||||||| Sbjct 131943 GATAAAGTACGTCCATCCTCTAACTGCTTCCCTGCAAATATAAGCCTTTGTTGATCAGGA 132002 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || |||||| ||| ||||| ||| | ||| | || Sbjct 132003 GGAATACCTTCTTTATCCTGGATTTTAGCTTTAACATTTTCTATTGTATCACTAGGCTCA 132062 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||| || ||||||||||| | ||||||| ||| |||||||| Sbjct 132063 ACTTCTAAAGTGATAGTTTTACCAGTAAGAGTTTTAACAAAAATCTGCAT 132112 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 |||||||| | ||| | || || || ||||||||||| || ||||| |||| || Sbjct 132816 ACTAAATGAAGAGTGGATTCCTTCTGAATGTTATAATCAGACAAGGTTCGACCATCTTCT 132875 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 ||||| || || ||||| |||| |||||||| ||||| || |||||||| || ||||| Sbjct 132876 AATTGCTTTCCTGCAAATATTAGCCTCTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGG 132935 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || ||| ||||||||| || | ||| | || || || | ||| |||||||| Sbjct 132936 ATCTTAGCTTTTACATTTTCAATGGTATCACTTGGCTCCACCTCCAAAGTGATGGTTTTT 132995 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | |||||| | ||| ||||||||||| Sbjct 132996 CCAGTAAGTGTTTTCACAAAGATCTGCATTTT 133027 Score = 127 bits (140), Expect = 4e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || |||||||| || | || || | |||||| || | ||| ||| || |||||||| || Sbjct 131125 ATGCCACCTCTCAGCCTCAAAACAAGATGTAATGTTGACTCCTTTTGA-ATATTATAGTC 131183 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 |||||||||| |||| || | || ||||||||||| || || ||||| ||||| || Sbjct 131184 TGATAATGTTCTGCCATCTTCTAGCTGCTTACCAGCAAAAATCAACCTCTGCTGATCTGG 131243 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || |||||||||||||||||||| ||| ||||| |||| ||| | || Sbjct 131244 TGGAATACCTTCTTTATCTTGTATTTTTGCTTTAACATTTTCAATAGTATCACTGGGCTC 131303 Query 192486 TACTTCTAGAGTAATGGTTTTACC 192509 ||||| | || || |||||||| Sbjct 131304 GACTTCCAACGTTATAGTTTTACC 131327 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | | || || ||||| | ||||| |||||| || || || ||| Sbjct 131427 ATTCCACCTCTTAATCTCAAAACCAAATGAAGAGTAGACTCTTTTTGAATGTTGTAGTCA 131486 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | ||||| |||||||| || | |||||| ||||| || Sbjct 131487 GACAGAGTACGGCCATCTTCAAGCTGTTTCCCAGCAAAAATAAGTCTCTGCTGATCTGGA 131546 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| ||||| ||||||||| || | || | || Sbjct 131547 GGGATTCCTTCTTTATCTTGGATTTTTGCTTTTACATTTTCGATGGTGTCACTAGGCTCA 131606 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||||| ||||| || || | ||||| | ||| |||||||| Sbjct 131607 ACTTCTAATGTAATCGTTTTTCCTGTAAGAGTTTTCACAAAAATCTGCAT 131656 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || ||||| | || |||| ||| | |||| ||||| |||||||| || Sbjct 131655 ATACCTCCCCTAAGCCTTAGGACTAGATGAAGGGTAGATTCTTTTTGAATATTATAGTCT 131714 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || |||||||||||||||||||| | | ||| ||||||||| Sbjct 131715 GAAAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGCTGCTGATCAGGT 131774 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || ||||| ||| || || || | || | ||| Sbjct 131775 GGAATGCCTTCTTTATCCTGGATTTTTGCTTTCACGTTTTCAATGGTGTCACTGGGCTCT 131834 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| |||||||| || ||||| | ||||| | ||| || ||||| Sbjct 131835 ACCTCTAACGTAATGGTCTTGCCAGTAAGAGTTTTTACAAAAATTTGCAT 131884 >seq3821 Length=102291 Score = 131 bits (144), Expect = 3e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 50208 ACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATA 50267 || ||||| ||| ||||| |||||| ||||| || |||||||||| || | |||| Sbjct 84873 ACCAAATTTTCATTCACAATGCCATCACTCGCTGCAAAAAATGCTAAAATGTGTGAAATA 84932 Query 50268 AAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACT 50327 || || ||||| | ||||| ||||||||| | | ||||| |||||||| || ||| Sbjct 84933 AAGTGCTTTTCTTCGGGCTTTAACTTTTCCCAATCTCCTAGATCTTTTGATAAGTCAACT 84992 Query 50328 TCTTCTATTGTCCAAAATGATGCTACGGATTTTTTATACATTTGATATATATCAAAATGT 50387 ||||| ||||| || || ||| | | ||||||||||| || ||||||| || Sbjct 84993 TCTTCAGCAGTCCAGAACGAAGCTTCAGCCTTTTTATACATCTGCCATATATCTTGATAC 85052 Query 50388 TCAATGGGAAATAGTACATATC 50409 ||||||||||||| |||| ||| Sbjct 85053 TCAATGGGAAATATTACAAATC 85074 Score = 125 bits (138), Expect = 1e-23 Identities = 166/226 (73%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 49846 CCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 49905 |||| || | | ||| |||||||| ||||| || | || |||||||| |||||||| | Sbjct 78312 CCTCATCTCGACTTATCAATTCATTGCTAAATGTAAGGCCAGGCATTAAACCTCTCTTCT 78371 Query 49906 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATG 49965 | ||||| ||||| |||||||| || |||||||||||| || || ||| ||||||| Sbjct 78372 TCAGCCAGAATATGGATGCAAATGAACCAGAAAAGAATATTCCTTCTACAGCAGCAAATG 78431 Query 49966 CTATTATTCTTGCTCCAAA-CATTAAT--TTATCATCTAATATCCAATTTATAGCCCAAT 50022 | | |||| | | ||||| || || ||| || || |||||||| | |||||||| Sbjct 78432 CAACGATTCGTTCACCAAAGGATGCATGCGTATGAT-TA--ATCCAATTCAAAGCCCAAT 78488 Query 50023 CTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068 | ||||| || || | | | | | | |||| ||||| || ||||| Sbjct 78489 CAGCTTTCTTCTTCACACAGGAAAGAGTTTCAATAGCATTGAATAA 78534 >seq18955 Length=240697 Score = 96.9 bits (106), Expect = 7e-15 Identities = 162/230 (70%), Gaps = 22/230 (10%) Strand=Plus/Plus Query 220300 TTTtaaaagaaaataatatagaatacgaacacatagattataaaaatgataaaat--aaa 220357 ||||| |||||||||||||| |||| ||| | ||||||||||| ||||| || | ||| Sbjct 183226 TTTTAGAAGAAAATAATATAAAATATGAAAATATAGATTATAAGAATGAAAAGGTTAAAA 183285 Query 220358 attatatgattatatacagaatgatata-aaaGAATCTAATCCGCATACTTTACATTCTA 220416 |||||| | |||||| |||| ||| ||| || | || || | |||| Sbjct 183286 ATTATA--AATATATATTAGATGAAATAGAAAAAAAGTGATGAAAGAACAATTCATTTAG 183343 Query 220417 AAAGATGGATATTAATGCCTGTTGATAATTTTAAAGAAGCTATAATGATGTTAAATAATT 220476 | | |||| |||||| || | | | |||||||||| |||||||||||||||||| | Sbjct 183344 AGAAATGGTGTTTAATGTCTATAGTTG-TTTTAAAGAATCTATAATGATGTTAAATA--T 183400 Query 220477 CTAAATGCAAAGAGGTAAGAATATATTATCTTAAATTAGAAAAAA-CATT 220525 ||| |||| ||| ||||||| | |||||||||| |||| Sbjct 183401 CTA-------------AAGATTATGTTATCTTCAGTTAGAAAAAATCATT 183437 >seq12235 Length=595988 Score = 84.2 bits (92), Expect = 4e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||| ||||| || ||||| |||||| || ||||| || | ||| |||| ||| || Sbjct 180033 TATACCTTCCTTGTCTTGAATTTTAGCCTTCACATTTTCAATTGTATCCGACGCTTCAAC 180092 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || || ||||| || |||||||||||||| | ||| |||||||| || Sbjct 180093 TTCGAGCGTGATGGTCTTCCCAGTTAATGTTTTCACAAAAATCTGCATCTT 180143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983614035086550