Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq12019 228 2e-54 seq18642 107 4e-18 seq12235 98.7 2e-15 seq1189 93.3 8e-14 >seq12019 Length=383594 Score = 228 bits (252), Expect = 2e-54 Identities = 188/229 (82%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | |||| |||||||||||| ||||||||||| || ||||||||||| | Sbjct 132568 TACCTCCTCTAAGTCGCAAAACTAAGTGCAGGGTAGATTCTTTTTGAATATTATAATCTG 132627 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| | || |||||||||||||| |||| || ||||| |||| Sbjct 132628 AGAGTGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATAAGTCGCTGCTGATCAGGAG 132687 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| || |||||||| || ||||||||||||||||| |||||| | ||||||| Sbjct 132688 GAATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATTGTATCACTGGGTTCTA 132747 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || || || || |||| ||||| |||||||||||||| Sbjct 132748 CCTCCAAAGTGATGGTTTTTCCAGTCAGAGTCTTCACAAATATCTGCAT 132796 Score = 196 bits (216), Expect = 9e-45 Identities = 171/213 (80%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || ||||| || ||||| ||||| ||||| || ||||||||||| | ||| ||| ||| Sbjct 132813 AGGACTAAATGAAGAGTGGATTCCTTCTGAATGTTATAATCAGACAAGGTTCGACCATCT 132872 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 |||| ||| ||||| ||||| ||||| || ||||| || ||||| ||||||||||| ||| Sbjct 132873 TCTAATTGCTTTCCTGCAAATATTAGCCTCTGTTGGTCAGGAGGAATTCCTTCCTTGTCT 132932 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||| ||||||||||||||||| |||||| | || || || |||||||| || || Sbjct 132933 TGGATCTTAGCTTTTACATTTTCAATGGTATCACTTGGCTCCACCTCCAAAGTGATGGTT 132992 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || | || || ||||| ||||||||| Sbjct 132993 TTTCCAGTAAGTGTTTTCACAAAGATCTGCATT 133025 Score = 194 bits (214), Expect = 3e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| || | || ||| || || |||||||| ||||| || || || || ||||| Sbjct 131430 CCACCTCTTAATCTCAAAACCAAATGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAC 131489 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || ||||| |||||||| || ||||| || ||||||||||| Sbjct 131490 AGAGTACGGCCATCTTCAAGCTGTTTCCCAGCAAAAATAAGTCTCTGCTGATCTGGAGGG 131549 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| |||||||| || ||||||||||||||||| || || ||| |||| || ||| Sbjct 131550 ATTCCTTCTTTATCTTGGATTTTTGCTTTTACATTTTCGATGGTGTCACTAGGCTCAACT 131609 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || ||||| || ||||| | || || ||||| |||||||| Sbjct 131610 TCTAATGTAATCGTTTTTCCTGTAAGAGTTTTCACAAAAATCTGCAT 131656 Score = 183 bits (202), Expect = 6e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||||||| | || || ||||||||||| ||||||||||| ||||| || || | Sbjct 131884 TACCTCCTCTCAACCTTAGTACCAAGTGCAGAGTCGATTCTTTCTGAATATTGTAGTCCG 131943 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | | || || |||| || || || ||||| || || ||||||||||| |||| Sbjct 131944 ATAAAGTACGTCCATCCTCTAACTGCTTCCCTGCAAATATAAGCCTTTGTTGATCAGGAG 132003 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||| || || || ||||| |||||||| || |||||| |||| || | Sbjct 132004 GAATACCTTCTTTATCCTGGATTTTAGCTTTAACATTTTCTATTGTATCACTAGGCTCAA 132063 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||||| || || || || || | || || ||||| |||||||| Sbjct 132064 CTTCTAAAGTGATAGTTTTACCAGTAAGAGTTTTAACAAAAATCTGCAT 132112 Score = 181 bits (200), Expect = 2e-40 Identities = 153/188 (81%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 |||||| | |||||||||||||| ||||| || ||||||||||| || |||| || || Sbjct 125417 CAGAACAAGATGCAGAGTAGATTCCTTCTGAATGTTATAATCAGAAAGGGTTCTGCCATC 125476 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||| || || || |||||||| || || | ||| ||||||||||| |||||||| ||||| Sbjct 125477 TTCAAGCTGCTTGCCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTATC 125536 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 ||| || ||||| || |||||||| || || ||| | ||||| ||||| | ||||||||| Sbjct 125537 TTGGATTTTTGCCTTCACATTTTCTATTGTGTCACTTGGTTCCACTTCAAGAGTTATCGT 125596 Query 82778 CTTGCCTG 82785 ||| |||| Sbjct 125597 CTTACCTG 125604 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| || | | || |||| || || ||||||||||| || |||||||| || | Sbjct 131656 TACCTCCCCTAAGCCTTAGGACTAGATGAAGGGTAGATTCTTTTTGAATATTATAGTCTG 131715 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| ||||||| |||||| ||||||||||| || | || ||||| || | Sbjct 131716 AAAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGCTGCTGATCAGGTG 131775 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||| || || |||||||| || |||||||| || ||| | || |||| Sbjct 131776 GAATGCCTTCTTTATCCTGGATTTTTGCTTTCACGTTTTCAATGGTGTCACTGGGCTCTA 131835 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || || || |||||||| || | || |||||||| || ||||| Sbjct 131836 CCTCTAACGTAATGGTCTTGCCAGTAAGAGTTTTTACAAAAATTTGCAT 131884 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | | || |||| |||||||||||||||||||| || ||||| || ||| Sbjct 132114 CCTCCTCGAAGCCTCAACACTAGATGCAGAGTAGATTCTTTCTGAATGTTATAGTCTGAT 132173 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| | || || |||||||| || || || |||||||| || || Sbjct 132174 AATGTACGCCCATCTTCCAACTGCTTACCAGCAAATATGAGCCTCTGTTGATCAGGTGGG 132233 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||||||||| || || ||||| ||||||||||| || ||| | ||||| ||| Sbjct 132234 ATGCCTTCCTTATCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCACTGGGTTCAACT 132293 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || || | || || ||||| |||||||| Sbjct 132294 TCCAATGTAATGGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 132340 Score = 149 bits (164), Expect = 1e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| | || ||| | || | || || || || || |||||||| || ||| Sbjct 131128 CCACCTCTCAGCCTCAAAACAAGATGTAATGTTGACTCCTTTTGAATATTATAGTCTGAT 131187 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | |||| || |||||||| || || |||||||| || | || || |||||||| || Sbjct 131188 AATGTTCTGCCATCTTCTAGCTGCTTACCAGCAAAAATCAACCTCTGCTGATCTGGTGGA 131247 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| |||||||| || |||||||| ||||||||||| |||||| | || || ||| Sbjct 131248 ATACCTTCTTTATCTTGTATTTTTGCTTTAACATTTTCAATAGTATCACTGGGCTCGACT 131307 Query 82764 TCCAAAGTTATCGTCTTGCCTG 82785 ||||| ||||| || || |||| Sbjct 131308 TCCAACGTTATAGTTTTACCTG 131329 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| | | ||||| | |||| || || ||||| || || |||||||||| Sbjct 132340 TACCTCCTCGAAGCCTTAGAACAAGATGCAATGTTGACTCTTTTTGGATGTTATAATCAG 132399 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | || ||||| | || || |||||||| || || ||||| ||||| || | Sbjct 132400 ATAATGTACGTCCATCTTCCAACTGCTTACCAGCAAATATAAGCCTTTGCTGATCGGGTG 132459 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||| || |||||||| |||||||| || |||||| | || || | Sbjct 132460 GAATGCCCTCCTTGTCTTGGATTTTTGCTTTGACATTTTCTATTGTATCACTGGGCTCAA 132519 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || ||||| || || || || | || || ||||| |||||||| Sbjct 132520 CTTCTAATGTTATGGTTTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 132568 >seq18642 Length=160248 Score = 107 bits (118), Expect = 4e-18 Identities = 230/344 (67%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 143943 TATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCAGTCTTGCATATA 144002 ||| | ||| | || |||||| || ||||| || || | ||||| || ||||| || Sbjct 47749 TATTCCGATGATGACGAGTGGGACACGTGGAAGAACATGTCAGATCCCGTTTTGCACATC 47690 Query 144003 GAACTTAGGAGATGGGCTGATGTTTTTATTATAGCGCCCTTAACAGCAAATACGTTAGCA 144062 ||| | || | ||||| |||| | || ||||| || ||| ||||| || |||||| Sbjct 47689 GAATTGCGGCGCTGGGCCGATGCCCTCATCATAGCTCCATTAGACGCAAACACTTTAGCA 47630 Query 144063 AAAATAGCCAATGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATA 144122 || || || || ||| | || ||||| |||| || | || | | || |||||| Sbjct 47629 AAGATTGCGAACGGTTTGTGTGATAACCTACTTACTTGTACTATCCGGGCATGGGATCGC 47570 Query 144123 AATAAACCTCTTATTTTTTGCCCCGCTATGAATACCCTTATGTGGGAACATCCTATTACA 144182 || || | | ||||| ||||||||||||||| |||||||| ||||| || ||| Sbjct 47569 TTGAAGCCATTGTTCTTTTGTCCCGCTATGAATACCTACATGTGGGATCATCCAATAACA 47510 Query 144183 GAAAAACATATAGATACTTTAAAACATATGGGTTTCATAGAAATAGAATGTATAGaaaaa 144242 | || || | | || || | |||| | || ||| || || | | |||| Sbjct 47509 GCCAAGCAGGTCAAGCAGTTGAAGGAATTGGGATACACAGAGATTCCTTGCGTCGCAAAA 47450 Query 144243 aaaCTAGCCTGTGGAGACGTAGGAAATGGTGCTATGGCAGAAGT 144286 ||| || ||||| || ||||| |||| | ||||| ||||| Sbjct 47449 CGACTGGCGTGTGGGGATGTAGGTTATGGCGGAATGGCCGAAGT 47406 >seq12235 Length=595988 Score = 98.7 bits (108), Expect = 2e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 ||||||||||||||||| || ||||| || ||||| ||||| ||||| |||| | | | Sbjct 179211 AAACGCAGAACTAAGTGAAGTGTAGACTCCTTCTGAATATTGTAATCTGATAATGTACGA 179270 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCT 82709 || ||||| | || ||||||||||| || |||| || ||||| ||||| || ||| Sbjct 179271 CCATCTTCCAACTGCTTTCCAGCAAAAATAAGTCGCTGCTGATCAGGAGGAATACCT 179327 >seq1189 Length=753237 Score = 93.3 bits (102), Expect = 8e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | ||| || || |||||||||| |||||||||||||| ||||| ||||| || Sbjct 67486 CCACCACGCAAGCGAAGGACTAAGTGCAATGTAGATTCTTTCTGAATATTGTAATCTGAC 67427 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || || ||||| | ||||| |||||||| || | || || ||||| ||||| Sbjct 67426 AAAGTCCTTCCATCTTCCAACTGTTTACCAGCAAAAATCAATCGCTGCTGATCAGGAGGG 67367 Query 82704 ATTCCT 82709 || ||| Sbjct 67366 ATACCT 67361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980963568533367