Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq18642 107 3e-18 seq12019 100 5e-16 >seq18642 Length=160248 Score = 107 bits (118), Expect = 3e-18 Identities = 230/344 (67%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 142962 TATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATATA 143021 ||| | ||| | || |||||| || ||||| || || | |||||||| ||||| || Sbjct 47749 TATTCCGATGATGACGAGTGGGACACGTGGAAGAACATGTCAGATCCCGTTTTGCACATC 47690 Query 143022 GAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCA 143081 ||| | || | ||||| |||| | | ||||| || ||| ||||| || |||||| Sbjct 47689 GAATTGCGGCGCTGGGCCGATGCCCTCATCATAGCTCCATTAGACGCAAACACTTTAGCA 47630 Query 143082 AAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATA 143141 || || || |||||| | || ||||| |||| || | || | | || |||||| Sbjct 47629 AAGATTGCGAACGGTTTGTGTGATAACCTACTTACTTGTACTATCCGGGCATGGGATCGC 47570 Query 143142 AATAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACA 143201 || || | | ||||||||||||||||||| | |||||||| ||||| || ||| Sbjct 47569 TTGAAGCCATTGTTCTTTTGTCCCGCTATGAATACCTACATGTGGGATCATCCAATAACA 47510 Query 143202 GAAAAACATATAGATGCTTTAAAACATATGGGTTTCATAGAAATAGAATGCATAGaaaaa 143261 | || || | | || || | |||| | || ||| || ||| | | |||| Sbjct 47509 GCCAAGCAGGTCAAGCAGTTGAAGGAATTGGGATACACAGAGATTCCTTGCGTCGCAAAA 47450 Query 143262 aaaCTAGCCTGCGGAGACATAGGAAATGGTGCTATGGCAGAAGT 143305 ||| || || || || |||| |||| | ||||| ||||| Sbjct 47449 CGACTGGCGTGTGGGGATGTAGGTTATGGCGGAATGGCCGAAGT 47406 >seq12019 Length=383594 Score = 100 bits (110), Expect = 5e-16 Identities = 108/145 (74%), Gaps = 11/145 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||||||||| || ||||||||||| | |||| || |||||||| Sbjct 132825 AGAGTGGATTCCTTCTGAATGTTATAATCAGACAAGGTTCGACCATCTTCTAATTGCTTT 132884 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| ||||| || ||||| | ||| | ||| ||||||| ||||| ||||| ||| Sbjct 132885 CCTGCAAATATTAGCCTCTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGGATCTTAGCT 132944 Query 81753 TTTATATTTTCAATCGTATTACCTG 81777 |||| ||||||||| |||| || || Sbjct 132945 TTTACATTTTCAATGGTATCACTTG 132969 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/146 (72%), Gaps = 11/146 (8%) Strand=Plus/Plus Query 81643 CAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTT---------- 81692 ||||||| |||||||||| || ||||||||||| || ||||| | |||| Sbjct 125429 CAGAGTAGATTCCTTCTGAATGTTATAATCAGAAAGGGTTCTGCCATCTTCAAGCTGCTT 125488 Query 81693 -CTAACAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGC 81751 | | |||| || || | ||| ||| ||||| | ||| |||| |||||||| || ||||| Sbjct 125489 GCCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTATCTTGGATTTTTGC 125548 Query 81752 TTTTATATTTTCAATCGTATTACCTG 81777 || | |||||| || || | || || Sbjct 125549 CTTCACATTTTCTATTGTGTCACTTG 125574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902635926386080