Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3821 163 4e-35 seq15467 123 3e-23 >seq3821 Length=102291 Score = 163 bits (180), Expect = 4e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 |||||||||||||||| || |||||||| || ||||||||||| || | ||| ||||| Sbjct 84874 CCAAATTTTCATTCACAATGCCATCACTCGCTGCAAAAAATGCTAAAATGTGTGAAATAA 84933 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 40118 | | ||||| ||||| | || || | ||| || | ||||||||||| || |||| Sbjct 84934 AGTGCTTTTCTTCGGGCTTTAACTTTTCCCAATCTCCTAGATCTTTTGATAAGTCAACTT 84993 Query 40119 CTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATT 40178 ||||||| ||||| ||||| || || |||||||| ||||| | ||||||||| |||| | Sbjct 84994 CTTCAGCAGTCCAGAACGAAGCTTCAGCCTTTTTATACATCTGCCATATATCTTGATACT 85053 Query 40179 GTATTGGAAAAATAACAAATCTA 40201 || ||||| || ||||||||| Sbjct 85054 CAATGGGAAATATTACAAATCTA 85076 Score = 156 bits (172), Expect = 6e-33 Identities = 167/220 (76%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||| ||| || ||||| || |||||| || |||||||||| ||| | ||| | Sbjct 78312 CCTCATCTCGACTTATCAATTCATTGCTAAATGTAAGGCCAGGCATTAAACCTCTCTTCT 78371 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| ||||||| ||||| || ||||||||||| || |||||||| || ||||||| Sbjct 78372 TCAGCCAGAATATGGATGCAAATGAACCAGAAAAGAATATTCCTTCTACAGCAGCAAATG 78431 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTAT---CATTATGTATCCACTTCTGTGCCCAATCAG 39815 |||| | || || || | || || || || ||||| ||| |||||||||| Sbjct 78432 CAACGATTCGTTCACCAAAGGATGCATGCGTATGATTAATCCAATTCAAAGCCCAATCAG 78491 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 |||||||||| ||||| | | ||||| |||||||| || Sbjct 78492 CTTTCTTCTTCACACAGGAAAGAGTTTCAATAGCATTGAA 78531 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 39876 TATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCG 39935 ||||||||| || ||||| || | || ||| |||||||||||||||| |||||||| | Sbjct 82884 TATCTTTAATGTAAGTATCAATAAGCAAACTGTACATTTCTGAATGGACATTTTCAATTG 82943 Query 39936 CCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTT 39995 | ||||| || || || ||||| | |||||||||| || || ||| || ||||||| Sbjct 82944 CTATCTGGAAACCATAGAAACAGCGGGCTTCAGTAACCTGCACTTCTTGACTGAATCTTT 83003 Query 39996 CCGCCAAAT 40004 | || ||| Sbjct 83004 CAACCTAAT 83012 >seq15467 Length=153806 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 ||||||||||||||||| || || | ||| || | |||||| || ||||| || | |||| Sbjct 63804 TGAAATTCCCCAGATAAAACCCTCCTAGTATAGAAATTACTAGTGTATGGCTCTATAGAT 63863 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||| |||||||| |||||||| || ||||||||||| || || | ||||| Sbjct 63864 TCATTATTTCCAAGAATTTGCGCAGTTGAAGCTGTTGGCATAGGGGCTACAAGCAAACTG 63923 Query 68839 TTTCTAAGACCAT 68851 || || | |||| Sbjct 63924 TTCCTTACTCCAT 63936 Score = 116 bits (128), Expect = 5e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| ||||| || ||||| |||| | ||| || |||||||||||||||| || Sbjct 76873 TTCAAATTCCTCCCCCCAGCATTCATGAAGTCCTGGTGATTCATTTGGACACATTAAACT 76932 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 ||||| || || | | |||||||||||||||| ||| |||||||| | || ||| Sbjct 76933 CCACATTTCGTCCTTTTCTACTCGTTTCATAAATAAATCTGGAATCCACAATGCATAAAA 76992 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 |||||||||| || | ||||| || || ||||| || || | ||| | ||| || | Sbjct 76993 CAGATCTCTGGCCCTCTGCTCTTCTTTGCCAGTATTCTTCTTTAAATCTAAAAAGTCAAA 77052 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTC 69742 || || | |||||| || |||| ||| || || | |||| |||| Sbjct 77053 TATGTCTGCATGCCAAGGCTCTAAATAAATTGCAAAAGCTCCAGGTC 77099 Score = 114 bits (126), Expect = 2e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || || | |||||||||||||| ||| | | || ||| || |||||||| || ||||| Sbjct 67351 GAGCCTTCATATGTTTCATAAGTTCCATATTTTTGAGCCAGCTCACAACTAGCTTCTAAA 67410 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 || | ||||||| ||||| || || | |||| | | ||| |||||| ||| ||| Sbjct 67411 GCTGCAAAATAAATAGTTTCAAATATTTCAATATTTAACTTTTGAGCTTCTTCACTGTCG 67470 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 |||||||| | | ||| || | ||| ||||| || ||||| || || || || ||| Sbjct 67471 AATGGATACCTCATCAAAATGAAAGTATCAGCCAAGCCTTGAACTCCTATTCCAATTGGT 67530 Query 69127 CTATGTCTCTTATTTGAACTTTCAGC 69152 ||||| || ||||| || | ||||| Sbjct 67531 CTATGCCTTTTATTAGACTTCTCAGC 67556 Score = 109 bits (120), Expect = 8e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 70335 ACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAAT 70394 ||||||| |||||||| || || || | |||||||||||| || | || || || || Sbjct 143694 ACTAAATGACTTTTTTGTCTCTTTATGCAGATTTGATATGGCAATGCGTGCAGCAAGGAT 143753 Query 70395 AGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAA 70454 ||||| |||||||||| |||||| ||| ||||| ||||| ||||| || |||| | Sbjct 143754 GGCATAATCAGGATGTTTTGTAGTCATAGTCGCTGCAATTTCTGCAGCCAAGTTATCAAG 143813 Query 70455 TTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCAT 70499 ||| | ||||||||| || ||| | || | || |||||||| Sbjct 143814 TTCAACAGTTGTAACACCAGGATACAAGCCATTTATGACTTTCAT 143858 Score = 104 bits (114), Expect = 3e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 68442 CCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATT 68501 |||||| || || ||||| ||||||| ||| |||| |||| || || || |||| ||| Sbjct 55141 CCATCCATAAAAGTGCATGCTTGTTAATTTTCCATAATTTGGTTCAGCAATGTGAACATT 55200 Query 68502 CATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTT 68561 | || ||||||||||| || |||| |||||||| || |||||||||| ||| | || Sbjct 55201 TAGAGACTGACTTTGATCTATATAAGCACCTCTATCAGCAGCCATTTTTAAGATATTTTT 55260 Query 68562 TTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 || || || ||||||| || | | | | |||| |||||| |||| Sbjct 55261 CTGCGGTATCTCCCAAACTGTACGATATAATTTCTTGAGATCATCAGGAA 55310 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 69829 CCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCC 69888 |||| ||||||||| ||| | || | |||| | | | || || |||||||| || Sbjct 102900 CCAGCAATATAACTGCCTGTAGCCCTAATACAATGTACATTTAATCCAATTCCTCCAGCA 102959 Query 69889 ATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCT 69948 ||| || |||| ||||||||||| || || ||||| || || ||||| || || || Sbjct 102960 GATTTTGAAATTAATGCACAACGTTTTAAAGTATCATAAATGCCTTCTATACTGTCTTCA 103019 Query 69949 ATCA-TGTTAAGAAGAAAACAGCTA 69972 ||| ||||||| |||||||||||| Sbjct 103020 GTCATTGTTAAG-AGAAAACAGCTA 103043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686319320626920