Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3821 131 1e-25 seq9355 104 2e-17 >seq3821 Length=102291 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 43685 GAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTAC 43744 ||||| || ||| ||||| | ||||| ||| | ||||| || |||||||| ||||| Sbjct 85087 GAAAACCCTCGTAGATTTGTAATATTTCCCATTGAGTATCAAGATATATGGCAGATGTAT 85028 Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA 43804 ||||| || | || || || ||||| || ||||||||||| || | ||||| ||| | Sbjct 85027 AAAAAGGCTGAAGCTTCGTTCTGGACTGCTGAAGAAGTTGACTTATCAAAAGATCTAGGA 84968 Query 43805 CATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTT 43864 ||||| ||||| || ||||||| || ||||| || |||| || |||||| Sbjct 84967 GATTGGGAAAAGTTAAAGCCCGAAGAAAAGCACTTTATTTCACACATTTTAGCATTTTTT 84908 Query 43865 GCTGCGAGCGACGGGATAGTCAATGAAAATTTGGT 43899 || ||||| || || || || |||||||||||||| Sbjct 84907 GCAGCGAGTGATGGCATTGTGAATGAAAATTTGGT 84873 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || | | ||||| || ||||| ||||| || || || || || |||||| Sbjct 82992 CAAGAAGTGCAGGTTACTGAAGCCCGCTGTTTCTATGGTTTCCAGATAGCAATTGAAAAT 82933 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 | ||||| |||||||||||| | || || ||||| ||||| |||||| Sbjct 82932 GTCCATTCAGAAATGTACAGTTTGCTTATTGATACTTACATTAAAGAT 82885 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 44483 TATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAAC 44542 |||| ||| |||| || |||||||||||||| ||||| || ||||| ||||||||| Sbjct 76540 TATAATGTTGAAAATCCATTTGATTTTATGGAGCATATTAGCTTAGAAGGGAAAACAAAC 76481 Query 44543 TTTTTTGAAAAACGCGTTGGAGAATATCA 44571 |||||||| ||| || ||||||||||| Sbjct 76480 TTTTTTGAGAAAAAAGTCGGAGAATATCA 76452 >seq9355 Length=738504 Score = 104 bits (114), Expect = 2e-17 Identities = 142/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 || |||||| | || | |||||||||| ||||| ||| ||| ||||||||||| || Sbjct 416735 AAGCATGTTAGAGGTATACTGCTTTATGGTCCACCTGGTACTGGGAAAACATTAATGGCC 416676 Query 19396 AGAGAACTTAGTAAA---TTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAA 19452 | || || | || ||| | ||| | ||||| || || |||||||| ||| | Sbjct 416675 CGTCAAATTGGACAAATGTTAAATGCAAGAGAACCT---AAGATAGTAAATGGGCCTCAG 416619 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 || | ||||||| || || ||||||| | ||| | ||| | ||||||||||| || Sbjct 416618 ATTCTGGATAAATACGTGGGAGAATCGGAGGCTAATATCCGAAGATTGTTTGCTGAGGCA 416559 Query 19513 GAAGAAGAACAAAAACG 19529 ||||||||| ||||||| Sbjct 416558 GAAGAAGAAGAAAAACG 416542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397123445211265