Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq12019 185 1e-41 seq12235 95.1 1e-14 >seq12019 Length=383594 Score = 185 bits (204), Expect = 1e-41 Identities = 167/210 (80%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || ||||| |||||||| ||||| | ||||| ||| | || Sbjct 131884 ATGCAAATTTTTGTAAAAACTCTTACTGGCAAGACCATTACGTTAGAGGTAGAGCCCAGT 131825 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| |||| || ||||| ||||| || || || ||||| || || ||| Sbjct 131824 GACACCATTGAAAACGTGAAAGCAAAAATCCAGGATAAAGAAGGCATTCCACCTGATCAG 131765 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||||||||| ||| | || |||| |||||| || ||||||||||| Sbjct 131764 CAGCGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCAGACTATAAT 131705 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 | ||||| ||||| || |||||||||||| Sbjct 131704 ATTCAAAAAGAATCTACCCTTCATCTAGTC 131675 Score = 178 bits (196), Expect = 1e-39 Identities = 166/211 (79%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| || || ||||| || || || || ||| | ||||| ||| || | Sbjct 133025 AATGCAGATCTTTGTGAAAACACTTACTGGAAAAACCATCACTTTGGAGGTGGAGCCAAG 132966 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| |||| | || ||||| || || |||||||| ||||||||||| ||||| Sbjct 132965 TGATACCATTGAAAATGTAAAAGCTAAGATCCAAGACAAGGAAGGAATTCCTCCTGACCA 132906 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | ||||| ||||| || |||||| | || |||| ||| ||| | | || ||||| Sbjct 132905 ACAGAGGCTAATATTTGCAGGAAAGCAATTAGAAGATGGTCGAACCTTGTCTGATTATAA 132846 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 | || |||||||||||||||||| ||||| Sbjct 132845 CATTCAGAAGGAATCCACTCTTCATTTAGTC 132815 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || || || || || ||| | ||||| || | || Sbjct 132796 ATGCAGATATTTGTGAAGACTCTGACTGGAAAAACCATCACTTTGGAGGTAGAACCCAGT 132737 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || ||||||||||| ||||| || ||||||||||| || ||| Sbjct 132736 GATACAATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 132677 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||| ||||| | || |||| ||||| || |||| |||||| Sbjct 132676 CAGCGACTTATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACACTCTCAGATTATAAT 132617 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| || || || |||| ||||| ||| | || || Sbjct 132616 ATTCAAAAAGAATCTACCCTGCACTTAGTTTTGCGACTTAGAGGAGG 132570 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || ||||| || ||||| ||||| | || ||||| | || Sbjct 132340 ATGCAGATCTTTGTTAAAACTCTTACTGGAAAGACCATTACATTGGAAGTTGAACCCAGT 132281 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| |||| |||||||| || || ||||| || || || || || || Sbjct 132280 GACACAATTGAAAATGTGAAAGCTAAAATCCAAGATAAGGAAGGCATCCCACCTGATCAA 132221 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||||||||| | || |||| ||||| || |||||||||| Sbjct 132220 CAGAGGCTCATATTTGCTGGTAAGCAGTTGGAAGATGGGCGTACATTATCAGACTATAAC 132161 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || ||||| ||||| |||||||| ||| | ||||| || || Sbjct 132160 ATTCAGAAAGAATCTACTCTGCATCTAGTGTTGAGGCTTCGAGGAGG 132114 Score = 141 bits (156), Expect = 1e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || ||||| || |||||||| || || || |||| | || | |||| ||||||| ||| Sbjct 125602 GGTAAGACGATAACTCTTGAAGTGGAACCAAGTGACACAATAGAAAATGTGAAGGCAAAA 125543 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || || || || || |||||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct 125542 ATCCAAGATAAAGAAGGAATTCCTCCAGATCAGCAACGTCTTATTTTTGCTGGCAAGCAG 125483 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || || |||| | ||||| | || ||||| | || |||||||| ||||| ||||| Sbjct 125482 CTTGAAGATGGCAGAACCCTTTCTGATTATAACATTCAGAAGGAATCTACTCTGCATCTT 125423 Query 27613 GTCTTGCGTCTTCGCGGTGGA 27633 || || | || || || ||| Sbjct 125422 GTTCTGAGACTCCGTGGAGGA 125402 Score = 136 bits (150), Expect = 5e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || ||||| || || || ||||| | || |||||| | || Sbjct 131656 ATGCAGATTTTTGTGAAAACTCTTACAGGAAAAACGATTACATTAGAAGTTGAGCCTAGT 131597 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| | || || ||||| || || || || ||||| |||||||| ||| Sbjct 131596 GACACCATCGAAAATGTAAAAGCAAAAATCCAAGATAAAGAAGGAATCCCTCCAGATCAG 131537 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||||||||| || || || || |||| ||||| || | ||||| || Sbjct 131536 CAGAGACTTATTTTTGCTGGGAAACAGCTTGAAGATGGCCGTACTCTGTCTGACTACAAC 131477 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | ||||| || || ||||||||| | || ||| Sbjct 131476 ATTCAAAAAGAGTCTACTCTTCATTTGGTTTTG 131444 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || ||||| || || || || || | || |||||| | || Sbjct 132568 ATGCAGATCTTTGTTAAAACTCTTACTGGAAAAACCATAACATTAGAAGTTGAGCCCAGT 132509 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | || || ||||| || ||||||||||| ||||| || || ||| Sbjct 132508 GATACAATAGAAAATGTCAAAGCAAAAATCCAAGACAAGGAGGGCATTCCACCCGATCAG 132449 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || |||||||||||||| | || |||| ||||| || | || ||||| Sbjct 132448 CAAAGGCTTATATTTGCTGGTAAGCAGTTGGAAGATGGACGTACATTATCTGATTATAAC 132389 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || || || | ||||| || | | ||||| || || Sbjct 132388 ATCCAAAAAGAGTCAACATTGCATCTTGTTCTAAGGCTTCGAGGAGG 132342 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||| | || || ||||| || | || || ||| | |||||| |||| |||| | || Sbjct 131333 CTTGCAGGTAAAACTATAACGTTGGAAGTCGAGCCCAGTGATACTATTGAAAATGTTAAA 131274 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || ||||| || || || || || ||||| ||||| |||||| | | |||||||||||| Sbjct 131273 GCAAAAATACAAGATAAAGAAGGTATTCCACCAGATCAGCAGAGGTTGATTTTTGCTGGT 131214 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| || || |||| | || || ||||||||||| | |||||||| || || | Sbjct 131213 AAGCAGCTAGAAGATGGCAGAACATTATCAGACTATAATATTCAAAAGGAGTCAACATTA 131154 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || ||| | || | ||||| Sbjct 131153 CATCTTGTTTTGAGGCTGAGAGGTGG 131128 >seq12235 Length=595988 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||| || |||||||| || ||||||||||| ||||| | || |||| |||| Sbjct 179326 GGTATTCCTCCTGATCAGCAGCGACTTATTTTTGCTGGAAAGCAGTTGGAAGATGGTCGT 179267 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || |||| || ||| | || ||||| || || ||||| |||| ||||| | || Sbjct 179266 ACATTATCAGATTACAATATTCAGAAGGAGTCTACACTTCACTTAGTTCTGCGTTTACGT 179207 Query 27628 GGTGG 27632 ||||| Sbjct 179206 GGTGG 179202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569820981001360