Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq12019 131 1e-25 >seq12019 Length=383594 Score = 131 bits (144), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 || ||||| |||||| ||||| |||||||||||||| || | ||||| | ||||| Sbjct 132816 ACTAAATGAAGAGTGGATTCCTTCTGAATGTTATAATCAGACAAGGTTCGACCATCTTCT 132875 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||| || || |||||||||| | ||||||||| || || | ||| ||||||||| | Sbjct 132876 AATTGCTTTCCTGCAAATATTAGCCTCTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGG 132935 Query 34618 ATCTTTTGTTTTAACGATAAAATTGTGT--CTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 ||||| ||||| | ||| || | ||| | |||||| |||| || || |||| Sbjct 132936 ATCTTAGCTTTTACATTTTCAATGGTATCACTTGG--CTCCACCTCCAAAGTGATGGTTT 132993 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 | || || | ||||||||||| |||||||| ||| Sbjct 132994 TTCCAGTAAGTGTTTTCACAAAGATCTGCATTTTG 133028 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| |||||||| ||||| ||| ||||||||||| || || || Sbjct 131430 CCACCTCTTAATCTCAAAACCAAATGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAC 131489 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| ||||| || ||||| || | | ||| || || || || Sbjct 131490 AGAGTACGGCCATCTTCAAGCTGTTTCCCAGCAAAAATAAGTCTCTGCTGATCTGGAGGG 131549 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| || || ||| ||| ||| ||||| | || ||||| ||| ||| Sbjct 131550 ATTCCTTCTTTATCTTGGATTTTTGCTTTTACATTTTCGATGGTGTCACTAGGCTCAACT 131609 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || |||||||| || || | |||||||||||||||||||| Sbjct 131610 TCTAATGTAATCGTTTTTCCTGTAAGAGTTTTCACAAAAATCTGCAT 131656 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| | |||||| | ||| ||||| || || ||||||||||| ||||| Sbjct 132114 CCTCCTCGAAGCCTCAACACTAGATGCAGAGTAGATTCTTTCTGAATGTTATAGTCTGAT 132173 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| ||| | ||||| | || ||||| |||||||| | | |||||| || || || Sbjct 132174 AATGTACGCCCATCTTCCAACTGCTTACCAGCAAATATGAGCCTCTGTTGATCAGGTGGG 132233 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| ||| ||| | ||| || | ||||||||| | || || Sbjct 132234 ATGCCTTCCTTATCTTGGAT-TTTAGCTTTCACATTTTCAATTGTGTCACTGGGTTCAAC 132292 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || | ||||| ||||| |||||||| Sbjct 132293 TTCCAATGTAATGGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 132340 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| ||||| || || || || || || |||||||| ||||||||||| Sbjct 132570 CCTCCTCTAAGTCGCAAAACTAAGTGCAGGGTAGATTCTTTTTGAATATTATAATCTGAG 132629 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| | || || || ||||| || | ||||| || || || || Sbjct 132630 AGTGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATAAGTCGCTGCTGATCAGGAGGA 132689 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || |||||| ||| ||| | ||||| | |||||| || | || || Sbjct 132690 ATTCCTTCTTTGTCT-TGAATTTTAGCTTTTACATTTTCAATTGTATCACTGGGTTCTAC 132748 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || ||||| || || | || |||||||| |||||||| Sbjct 132749 CTCCAAAGTGATGGTTTTTCCAGTCAGAGTCTTCACAAATATCTGCAT 132796 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||| ||||| ||||||||||| || | ||| || | ||||| | || ||||| ||||| Sbjct 132377 CTCTTTTTGGATGTTATAATCAGATAATGTACGTCCATCTTCCAACTGCTTACCAGCAAA 132436 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-G 34633 ||| | | || || || || || | |||||||||||| ||| ||||| ||| || Sbjct 132437 TATAAGCCTTTGCTGATCGGGTGGAATGCCCTCCTTGTCTTGGAT-TTTTGCTTTGACAT 132495 Query 34634 ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||||| || | ||| ||||| | ||||| ||||| || || | ||||| | Sbjct 132496 TTTCTATTGTATCACTGGGCTCAACTTCTAATGTTATGGTTTTTCCAGTAAGAGTTTTAA 132555 Query 34694 CAAAAATCTGCAT 34706 |||| |||||||| Sbjct 132556 CAAAGATCTGCAT 132568 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || | ||| || | ||| | || |||||||||||| ||||| ||||| Sbjct 131127 GCCACCTCTCAGCCTCAAAACAAGATGTAATGTTGACTCCTTTTGAATATTATAGTCTGA 131186 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||||| | ||||| || || ||||| ||||| || || | ||| || || || || Sbjct 131187 TAATGTTCTGCCATCTTCTAGCTGCTTACCAGCAAAAATCAACCTCTGCTGATCTGGTGG 131246 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCA 34657 | || || || ||| || ||||| |||||| | ||| || || | ||| | Sbjct 131247 AATACCTTCTTTATCT-TGTATTTTTGCTTTAACATTTTCAATAGTATCACTGGGCTCGA 131305 Query 34658 CTTCCACGGTTATCGTTTTACC 34679 |||||| ||||| |||||||| Sbjct 131306 CTTCCAACGTTATAGTTTTACC 131327 Score = 84.2 bits (92), Expect = 1e-11 Identities = 129/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| ||||| ||||| |||||||||||||| ||||| |||| | |||||||| || Sbjct 125426 ATGCAGAGTAGATTCCTTCTGAATGTTATAATCAGAAAGGGTTCTGCCATCTTCAAGCTG 125485 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || || ||||| || | ||| || || || || || | ||| || || ||| ||| || Sbjct 125486 CTTGCCAGCAAAAATAAGACGTTGCTGATCTGGAGGAATTCCTTCTTTATCTTGGAT-TT 125544 Query 34623 TTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACC 34679 ||| || || | |||||||| | | | |||||||| | |||||||| ||||| Sbjct 125545 TTGCCTTCACATTTTCTATTGTGTCACTTGGT-TCCACTTCAAGAGTTATCGTCTTACC 125602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314466263088149