Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq12019 104 2e-17 >seq12019 Length=383594 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||||||||| || |||||||| | | ||| ||| | || || | ||| || || ||||| Sbjct 132377 CTCTTTTTGGATGTTATAATCAGATAATGTACGTCCATCTTCCAACTGCTTACCAGCAAA 132436 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 |||||| | ||||| |||| || | || ||| ||||| |||||| ||||| | Sbjct 132437 TATAAGCCTTTGCTGATCGGGTGGAATGCCCTCCTTGTCTTGGATTTTTGCTTTGACATT 132496 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | ||||| || | ||| || || | || || ||||||| || || |||||||| Sbjct 132497 TTCTATTGTATCACTGGGCTCAACTTCTAATGTTATGGTTTTTCCAGTAAGAGTTTTAAC 132556 Query 39273 AAAGATTTGCAT 39284 |||||| ||||| Sbjct 132557 AAAGATCTGCAT 132568 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || || || || || || || |||||||| ||||||||||| | Sbjct 132570 CCTCCTCTAAGTCGCAAAACTAAGTGCAGGGTAGATTCTTTTTGAATATTATAATCTGAG 132629 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||| ||| | || || | ||| || || ||||| ||||| |||||||| || | || Sbjct 132630 AGTGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATAAGTCGCTGCTGATCAGGAGGA 132689 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||||| ||||| ||| | | | | ||||| || | || || Sbjct 132690 ATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATTGTATCACTGGGTTCTACC 132749 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| ||||||| ||||| || || ||||| || ||||| Sbjct 132750 TCCAAAGTGATGGTTTTTCCAGTCAGAGTCTTCACAAATATCTGCAT 132796 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || || |||||||| | || |||||||| || || ||||||||| || Sbjct 131417 AAATATCTGCATTCCACCTCTTAATCTCAAAACCAAATGAAGAGTAGACTCTTTTTGAAT 131476 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 || || || | || || || | || ||||||||||| || ||||| ||||| | ||| Sbjct 131477 GTTGTAGTCAGACAGAGTACGGCCATCTTCAAGCTGTTTCCCAGCAAAAATAAGTCTCTG 131536 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 ||| || | || | | ||||| || |||||| ||| | | | | || || Sbjct 131537 CTGATCTGGAGGGATTCCTTCTTTATCTTGGATTTTTGCTTTTACATTTTCGATGGTGTC 131596 Query 39225 GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||| || || | || || ||||||| || || ||||| ||||| || ||||| Sbjct 131597 ACTAGGCTCAACTTCTAATGTAATCGTTTTTCCTGTAAGAGTTTTCACAAAAATCTGCAT 131656 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 |||||||| |||||||| || | ||| || || | || || | ||||| || ||||| Sbjct 131694 TCTTTTTGAATATTATAGTCTGAAAGAGTACGACCATCTTCTAATTGTTTACCAGCAAAG 131753 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 |||||||||||||| || | || | || ||||| ||| |||||| ||| | | Sbjct 131754 ATAAGACGCTGCTGATCAGGTGGAATGCCTTCTTTATCCTGGATTTTTGCTTTCACGTTT 131813 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | || || || | ||| || || | ||| || | || || || || ||||| ||| Sbjct 131814 TCAATGGTGTCACTGGGCTCTACCTCTAACGTAATGGTCTTGCCAGTAAGAGTTTTTACA 131873 Query 39274 AAGATTTGCAT 39284 || |||||||| Sbjct 131874 AAAATTTGCAT 131884 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/245 (68%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || |||||||| || | || ||||| || || || ||||| | Sbjct 131871 ACAAAAATTTG--CATACCTCCTCTCAACCTTAGTACCAAGTGCAGAGTCGATTCTTTCT 131928 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||| || || | | || ||| | || || | ||| || || ||||||||||| | Sbjct 131929 GAATATTGTAGTCCGATAAAGTACGTCCATCCTCTAACTGCTTCCCTGCAAATATAAGCC 131988 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 || || || | || | | ||||| ||| |||||| ||| | | | | | Sbjct 131989 TTTGTTGATCAGGAGGAATACCTTCTTTATCCTGGATTTTAGCTTTAACATTTTCTATTG 132048 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 |||| || | ||| || || | |||||| |||| || || || ||||||||||| || | Sbjct 132049 TATCACTAGGCTCAACTTCTAAAGTGATAGTTTTACCAGTAAGAGTTTTAACAAAAATCT 132108 Query 39281 GCATC 39285 ||||| Sbjct 132109 GCATC 132113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429186195572189