Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq12019 132 3e-26 >seq12019 Length=383594 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| || || ||||||||||| || | |||||||| | | Sbjct 131656 ATGCAGATTTTTGTGAAAACTCTTACAGGAAAAACGATTACATTAGAAGTTGAGCCTAGT 131597 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| ||||| |||||| || |||||||| | || |||||||| Sbjct 131596 GACACCATCGAAAATGTAAAAGCAAAAATCCAAGATAAAGAAGGAATCCCTCCAGATCAG 131537 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || ||||| || ||||| | || ||| | || |||||| Sbjct 131536 CAGAGACTTATTTTTGCTGGGAAACAGCTTGAAGATGGCCGTACTCTGTCTGACTACAAC 131477 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||||||||| || | ||||| ||||| || || |||| ||| Sbjct 131476 ATTCAAAAAGAGTCTACTCTTCATTTGGTTTTGAGATTAAGAGGTGGA 131429 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || |||||||| || || |||||||| || || | |||||||| ||| Sbjct 132568 ATGCAGATCTTTGTTAAAACTCTTACTGGAAAAACCATAACATTAGAAGTTGAGCCCAGT 132509 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | ||| |||||| ||||| || || | || || ||||| Sbjct 132508 GATACAATAGAAAATGTCAAAGCAAAAATCCAAGACAAGGAGGGCATTCCACCCGATCAG 132449 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | |||||||| || || || ||||||| | ||| || ||| ||||| ||| Sbjct 132448 CAAAGGCTTATATTTGCTGGTAAGCAGTTGGAAGATGGACGTACATTATCTGATTATAAC 132389 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||||||||| ||||| ||| | ||| ||||| | |||||||| Sbjct 132388 ATCCAAAAAGAGTCAACATTGCATCTTGTTCTAAGGCTTCGAGGAGG 132342 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| |||||||| || || || ||||| |||||| | |||||||| | | Sbjct 132112 ATGCAGATTTTTGTTAAAACTCTTACTGGTAAAACTATCACTTTAGAAGTTGAGCCTAGT 132053 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | | |||| ||||| | ||||| || ||||||||| | || || ||||| Sbjct 132052 GATACAATAGAAAATGTTAAAGC-TAAAATCCAGGATAAAGAAGGTATTCCTCCTGATCA 131994 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | |||||||| || || || | || || | ||| |||||| || ||||| Sbjct 131993 ACAAAGGCTTATATTTGCAGGGAAGCAGTTAGAGGATGGACGTACTTTATCGGACTACAA 131934 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||| || || | || || || |||||||| ||||||| Sbjct 131933 TATTCAGAAAGAATCGACTCTGCACTTGGTACTAAGGTTGAGAGGAGG 131886 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || ||||| || || |||||||| |||||| | || || || | Sbjct 133027 AAAATGCAGATCTTTGTGAAAACACTTACTGGAAAAACCATCACTTTGGAGGTGGAGCCA 132968 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||||| ||||| || || ||||| ||||| | || || || Sbjct 132967 AGTGATACCATTGAAAATGTAAAAGCTAAGATCCAAGACAAGGAAGGAATTCCTCCTGAC 132908 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||| | |||||||||| || || ||| | ||||| | || || || ||||| Sbjct 132907 CAACAGAGGCTAATATTTGCAGGAAAGCAATTAGAAGATGGTCGAACCTTGTCTGATTAT 132848 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| || || || ||||| | |||||||| | ||||| || || || Sbjct 132847 AACATTCAGAAGGAATCCACTCTTCATTTAGTCCTCAGGTTACGTGGTGG 132798 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || |||||||| |||||| | || || || ||| Sbjct 132796 ATGCAGATATTTGTGAAGACTCTGACTGGAAAAACCATCACTTTGGAGGTAGAACCCAGT 132737 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| |||||| ||||||||||| | || || ||||| Sbjct 132736 GATACAATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 132677 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||| || || || ||||||| | ||| || | ||||| || Sbjct 132676 CAGCGACTTATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACACTCTCAGATTATAAT 132617 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || |||||||| || || | || |||||||| Sbjct 132616 ATTCAAAAAGAATCTACCCTGCACTTAGTTTT 132585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337726784515724