Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3821 127 3e-24 seq15467 118 1e-21 >seq3821 Length=102291 Score = 127 bits (140), Expect = 3e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 ||||||| ||||| || || |||||||| || |||||||||||||| | ||| ||||| Sbjct 84874 CCAAATTTTCATTCACAATGCCATCACTCGCTGCAAAAAATGCTAAAATGTGTGAAATAA 84933 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642 | | ||||| | || | | || | ||| || | ||||||||||| || |||| Sbjct 84934 AGTGCTTTTCTTCGGGCTTTAACTTTTCCCAATCTCCTAGATCTTTTGATAAGTCAACTT 84993 Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATT 48702 ||||||| ||||| || || || || || ||||||||||| | ||||||||| || | Sbjct 84994 CTTCAGCAGTCCAGAACGAAGCTTCAGCCTTTTTATACATCTGCCATATATCTTGATACT 85053 Query 48703 GGATTGGGAAAATAACAAATCTA 48725 || || || || ||||||||| Sbjct 85054 CAATGGGAAATATTACAAATCTA 85076 Score = 100 bits (110), Expect = 4e-16 Identities = 162/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 48155 ATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCC 48214 ||| | |||| |||||| ||| || ||||| || |||||| || || ||||||| || Sbjct 78305 ATGCATACCT-CATCTCGACTTATCAATTCATTGCTAAATGTAAGGCCAGGCATTAAACC 78363 Query 48215 ACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGC 48274 | || || ||||| ||||| | || || || |||||||||||||| |||||||| || Sbjct 78364 TCTCTTCTTCAGCCAGAATATGGATGCAAATGAACCAGAAAAGAATATTCCTTCTACAGC 78423 Query 48275 CGCAAATGCGGTAAGTCTCTCTCCGTA-ACTGGCTTCGT-TG-TGTATCCACCGTTGTGC 48331 |||||||| | || || || | || | ||| || | ||||| || Sbjct 78424 AGCAAATGCAACGATTCGTTCACCAAAGGATGCATGCGTATGATTAATCCAATTCAAAGC 78483 Query 48332 CCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 ||||||||| |||||||| ||||| | | ||||| |||||||| || Sbjct 78484 CCAATCAGCTTTCTTCTTCACACAGGAAAGAGTTTCAATAGCATTGAA 78531 Score = 95.1 bits (104), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTC---TTGAGACATAACTCCCATTTT 47851 |||||| || ||||||| | ||| | | ||| || || |||||| ||||| || Sbjct 76391 TTAAAAATCTGCATCTAATGTGAAACGGTGATCCTCCTTTTTAGACATGACTCCACACTT 76450 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||||||| || || |||||| ||||| || ||||| ||||| || |||| || Sbjct 76451 TTGATATTCTCCGACTTTTTTCTCAAAAAAGTTTGTTTTCCCTTCTAAGCTAATATGCTC 76510 Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAAT 47944 |||||||||||||||||| | ||||||| || Sbjct 76511 CATAAAATCAAATGGATTTTCAACATTATATAT 76543 Score = 89.7 bits (98), Expect = 7e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 48400 TATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTG 48459 ||||||||| ||||||||| || | | ||| |||||||| || || | ||||||||||| Sbjct 82884 TATCTTTAATGTAAGTATCAATAAGCAAACTGTACATTTCTGAATGGACATTTTCAATTG 82943 Query 48460 CCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTT 48519 | ||||| || || || ||||| | ||||| || | ||| || || || |||| || Sbjct 82944 CTATCTGGAAACCATAGAAACAGCGGGCTTCAGTAACCTGCACTTCTTGACTGAATCTTT 83003 Query 48520 CAGCCAAAT 48528 || || ||| Sbjct 83004 CAACCTAAT 83012 >seq15467 Length=153806 Score = 118 bits (130), Expect = 1e-21 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 ||||||||| || ||||| |||| | ||| || |||||||||| ||||| || Sbjct 76873 TTCAAATTCCTCCCCCCAGCATTCATGAAGTCCTGGTGATTCATTTGGACACATTAAACT 76932 Query 77984 CCAGTCACCATCTTCCTTA---ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 78040 ||| || || ||||| |||||||||||||| | ||| || ||||| | ||| Sbjct 76933 CCA--CATT-TCGTCCTTTTCTACTCGTTTCATAAATAAATCTGGAATCCACAATGCATA 76989 Query 78041 AAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTC 78100 ||| ||||||| || || || ||||| || || |||||||| || | ||| | ||| || Sbjct 76990 AAACAGATCTCTGGCCCTCTGCTCTTCTTTGCCAGTATTCTTCTTTAAATCTAAAAAGTC 77049 Query 78101 CATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTC 78150 | || || | |||||| || |||| ||| ||||| | | ||||||||| Sbjct 77050 AAATATGTCTGCATGCCAAGGCTCTAAATAAATTGCAAAAGCTCCAGGTC 77099 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 77355 GATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAAT 77414 || || | |||||||||||||| ||| | | ||| ||| || |||||||| ||||| || Sbjct 67351 GAGCCTTCATATGTTTCATAAGTTCCATATTTTTGAGCCAGCTCACAACTAGCTTCTAAA 67410 Query 77415 GCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCA 77474 ||| | ||||||| ||||| || || | |||| | | ||| ||||| ||| || Sbjct 67411 GCTGCAAAATAAATAGTTTCAAATATTTCAATATTTAACTTTTGAGCTTCTTCACTGTCG 67470 Query 77475 AACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGT 77534 || ||||| | | ||| || | ||| || || || |||||||| || ||||| ||| Sbjct 67471 AATGGATACCTCATCAAAATGAAAGTATCAGCCAAGCCTTGAACTCCTATTCCAATTGGT 67530 Query 77535 CTATGTCTCTTATTGGA 77551 ||||| || ||||| || Sbjct 67531 CTATGCCTTTTATTAGA 67547 Score = 109 bits (120), Expect = 8e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 78743 ACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAAT 78802 ||||||| |||||||| || || || ||||| |||| || || | |||||| || || Sbjct 143694 ACTAAATGACTTTTTTGTCTCTTTATGCAGATTTGATATGGCAATGCGTGCAGCAAGGAT 143753 Query 78803 AGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAA 78862 |||||||||||||||| |||||| ||| ||||| |||||||| || || |||| | Sbjct 143754 GGCATAATCAGGATGTTTTGTAGTCATAGTCGCTGCAATTTCTGCAGCCAAGTTATCAAG 143813 Query 78863 CTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCAT 78907 || | |||||| || ||| ||| | || | || |||||||| Sbjct 143814 TTCAACAGTTGTAACACCAGGATACAAGCCATTTATGACTTTCAT 143858 Score = 105 bits (116), Expect = 9e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 |||||||| ||||| || || || | ||| || | |||||| || ||||| || | |||| Sbjct 63804 TGAAATTCCCCAGATAAAACCCTCCTAGTATAGAAATTACTAGTGTATGGCTCTATAGAT 63863 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||| | |||||| ||||| ||||| ||||||||||| || || | ||||| Sbjct 63864 TCATTATTTCCAAGAATTTGCGCAGTTGAAGCTGTTGGCATAGGGGCTACAAGCAAACTG 63923 Query 77247 TTTCTGAGACCAT 77259 || || | |||| Sbjct 63924 TTCCTTACTCCAT 63936 Score = 104 bits (114), Expect = 3e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 76850 CCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATT 76909 |||||| || || ||||||||||| | ||| |||| | || || || || |||| ||| Sbjct 55141 CCATCCATAAAAGTGCATGCTTGTTAATTTTCCATAATTTGGTTCAGCAATGTGAACATT 55200 Query 76910 CATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTT 76969 | |||||||||||||| || |||| ||||||||||| |||||||||| || | || Sbjct 55201 TAGAGACTGACTTTGATCTATATAAGCACCTCTATCAGCAGCCATTTTTAAGATATTTTT 55260 Query 76970 TTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 || || || ||||||| || | | || |||| |||||| |||| Sbjct 55261 CTGCGGTATCTCCCAAACTGTACGATATAATTTCTTGAGATCATCAGGAA 55310 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| | ||| || | || ||||||||||| |||||||| |||||||| | || || Sbjct 107176 AGTTCCAGAATTGAAGAGGGTTGGAGATGCATGAGTAAACCACTTTTCAGACAATAAATG 107235 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||| |||||||||| || ||||| ||| || || || || || ||||| | Sbjct 107236 ATATGTCTCAATAGCTGCATCAATGTCATCACCATGTATACCAACAGCAACTCGCATAAG 107295 Query 78518 CATATGCTGAGGTCTTTCAAC 78538 |||||| || |||| ||||| Sbjct 107296 CATATGTTGCGGTCGCTCAAC 107316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694072661285920