Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stegodyphus_20mimosarum_20[genbank_20GCA_5F000611955.2_202014-08-01] 68,653 sequences; 2,738,704,917 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq12019 116 3e-21 >seq12019 Length=383594 Score = 116 bits (128), Expect = 3e-21 Identities = 159/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || || |||| || |||||||| || |||| |||||||| Sbjct 132796 ATGCAGATATTTGTGAAGACTCTGACTGGAAAAACCATCACTTTGGAGGTAGAACCCAGT 132737 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | |||||| |||||| ||||||||||| |||| ||||| Sbjct 132736 GATACAATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 132677 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 || | ||||| | ||| || || || ||||||||| | | ||| | | ||||||| Sbjct 132676 CAGCGACTTATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACACTCT--CAGATTATA 132619 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCT 111317 |||| |||||||||||||| || || ||||| ||||| || Sbjct 132618 ATATTCAAAAAGAATCTACCCTGCACTTAGTTTTGCGACT 132579 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| | || ||||| |||||||| | || || ||||| Sbjct 131884 ATGCAAATTTTTGTAAAAACTCTTACTGGCAAGACCATTACGTTAGAGGTAGAGCCCAGT 131825 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || ||| |||||| || ||||||||| |||| ||||| Sbjct 131824 GACACCATTGAAAACGTGAAAGCAAAAATCCAGGATAAAGAAGGCATTCCACCTGATCAG 131765 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | ||||| | ||| || |||||||| |||||| | ||| | | || |||||| Sbjct 131764 CAGCGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCAGACTATAAT 131705 Query 111280 ATACAAAAAGAATCTACACTACATTTAGT 111308 || |||||||||||||| || ||| |||| Sbjct 131704 ATTCAAAAAGAATCTACCCTTCATCTAGT 131676 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| | || || || |||||||| ||||| |||||||| Sbjct 132340 ATGCAGATCTTTGTTAAAACTCTTACTGGAAAGACCATTACATTGGAAGTTGAACCCAGT 132281 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || ||| ||||| || || |||||| | || |||||| Sbjct 132280 GACACAATTGAAAATGTGAAAGCTAAAATCCAAGATAAGGAAGGCATCCCACCTGATCAA 132221 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTATA 111277 || ||||| || | ||| || || || ||||||||| | | | ||| | || |||| Sbjct 132220 CAGAGGCTCATATTTGCTGGTAAGCAGTTGGAAGATGGGCGTACATTAT--CAGACTATA 132163 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | || || ||||||||||| || ||| |||||||| | || || || || Sbjct 132162 ACATTCAGAAAGAATCTACTCTGCATCTAGTGTTGAGGCTTCGAGGAGG 132114 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| | || || |||||||| || | ||| || ||||| Sbjct 132568 ATGCAGATCTTTGTTAAAACTCTTACTGGAAAAACCATAACATTAGAAGTTGAGCCCAGT 132509 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | | | | || ||| |||||| ||||| || ||| |||| |||||| Sbjct 132508 GATACAATAGAAAATGTCAAAGCAAAAATCCAAGACAAGGAGGGCATTCCACCCGATCAG 132449 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 ||||||||||| | ||| || || || ||||||||| | | | ||| | ||||||| Sbjct 132448 CAAAGGCTTATATTTGCTGGTAAGCAGTTGGAAGATGGACGTACATTAT--CTGATTATA 132391 Query 111278 ATATACAAAAAGAATCTACACTACAT 111303 | || |||||||| || ||| | ||| Sbjct 132390 ACATCCAAAAAGAGTCAACATTGCAT 132365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421458267009928